v1.6.3

What's Changed

• Contributing md by @Fattigman in #47
• pass check lib compatibility flag by @henningonsbring in #46
• remove unecessary line by @henningonsbring in #48
• also md5sum symlinks by @henningonsbring in #49
• stage and prod profiles by @henningonsbring in #50
• do not sync stage runs by @henningonsbring in #51
• support for alignment by @henningonsbring in #52
• fixed input by @henningonsbring in #54
• New cellranger version 7.2.0 by @Fattigman in #53

New Contributors

• @henningonsbring made their first contribution in #46

Full Changelog: v1.6.0...v1.6.3

v1.6.0

What's Changed

• updated manifest with software versions by @Fattigman in #44
• Added nextflow conf for cellranger argument by @Fattigman in #45

Full Changelog: v1.5.0...v1.6.0

v1.5.0

What's Changed

• Fix flex mqc yaml by @Fattigman in #41
• Add docs by @Fattigman in #42

Full Changelog: v1.4.1...v1.5.0

v1.4.1

What's Changed

• Fix vdjpath by @Fattigman in #40

Full Changelog: v1.4.0...v1.4.1

v1.4.0

What's Changed

• Create main.yml by @Fattigman in #32
• creates multiqc dir by @Fattigman in #33
• Add issue templates by @Fattigman in #37
• Fix count to qc by @Fattigman in #35
• Dev by @Fattigman in #39

Full Changelog: v1.3.0...v1.4.0

v1.3.0

What's Changed

• Hotfix the mqc.yaml for count workflows by @Fattigman in #28
• Multiqc capture all lib type info from cellranger multi by @Fattigman in #30
• Update manifest.html for v1.3.0 by @Fattigman in #31

Full Changelog: v1.2.4...v1.3.0

v1.2.4

What's Changed

• Hotfixes by @Fattigman in #26
• Webpack and multiqc stable for both count and multi worfklows by @Fattigman in #27

Full Changelog: v1.2.3...v1.2.4

v1.2.3

What's Changed

• Update manifest by @Fattigman in #24
• correct headers in libraries section for sc multi by @Fattigman in #25

Full Changelog: v1.2.2...v1.2.3

v1.2.2

What's Changed

• Bug fix, named processes have slurm executor by @Fattigman in #23

Full Changelog: v1.2.1...v1.2.2

v1.2.1

What's Changed

• Change default executor to local for smaller processes by @Fattigman in #20
• scmulti-10x generates correctly formatted config csv files by @Fattigman in #21
• v1.2.1 release by @Fattigman in #22

Full Changelog: v1.2.0...v1.2.1