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scBench canonical data v1 (4T1 tumor scRNA-seq)

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@daniel04wawng daniel04wawng released this 22 Apr 02:48

Data for scBench canonical 7-task benchmark on mouse 4T1 mammary tumor scRNA-seq (Chromium 10x platform).

  • 4T1_viable_raw_counts.h5ad (1.0 GB) — QC task
  • 4T1_viable_filtered.h5ad (1.0 GB) — normalization task
  • 4T1_viable_normalized.h5ad (1.5 GB) — HVG + cell-typing compartments tasks
  • 4T1_cleaned_celltypes_only.h5ad (1.5 GB) — clustering + DE (contractile CAF) tasks
  • 4T1_Thy1.1_CAFs.h5ad (279 MB) — trajectory analysis task

Source: latchbio/scbench. Public Apache-2.0 data.