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v2.26.1

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@github-actions github-actions released this 04 Sep 21:46
· 7 commits to main since this release
d27dc84

What's Changed

Description

This release adds new catalog formats for ExpansionHunter, STRkit, and UCSC,
alongside sitemap and robots.txt files for search-engine discovery.

Fixes: #157 #280 #333 #507

Major Changes

  • Added ExpansionHunter JSON catalogs for hg38, hg19, and T2T-CHM13.
  • Added STRkit BED catalogs with stable STRchive locus IDs and motifs in the
    required final field.
  • Added UCSC BED16 and bigBed (bed9+7) catalogs for hg38, hg19, and
    T2T-CHM13, including an autoSql schema and evidence-based item colors.
  • Added Snakemake rules to generate new catalog artifacts, download matching
    chromosome-size files, and create bigBed files.
  • Updated release automation to publish ExpansionHunter JSON, UCSC bigBed, and
    versioned autoSql schema assets.

Minor Changes

  • Refactored make-catalog.py around a declarative format registry.
  • Removed serializer side effects on input loci and replaced STRaglr's parsing of
    Atarva text with shared repeat_bed_records data.
  • Restored loci with partially missing pathogenicity thresholds to general BED,
    STRaglr, and STRanger catalogs where formats support inference or missing
    values.
  • Added evidence labels and evidence-based UCSC item colors.
  • Added catalog documentation, file inventories, format references,
    catalog-count explanation, and UCSC import guidance.
  • Added ucsc-bedtobigbed to the project environment.
  • Added sitemap and robots.txt files for SEO.

Full Changelog: v2.26.0...v2.26.1