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v2.26.1
What's Changed
- New catalogs by @hdashnow in #515 and #517
- add sitemap and robots by @vincerubinetti in #513
Description
This release adds new catalog formats for ExpansionHunter, STRkit, and UCSC,
alongside sitemap and robots.txt files for search-engine discovery.
Major Changes
- Added ExpansionHunter JSON catalogs for hg38, hg19, and T2T-CHM13.
- Added STRkit BED catalogs with stable STRchive locus IDs and motifs in the
required final field. - Added UCSC BED16 and bigBed (
bed9+7) catalogs for hg38, hg19, and
T2T-CHM13, including an autoSql schema and evidence-based item colors. - Added Snakemake rules to generate new catalog artifacts, download matching
chromosome-size files, and create bigBed files. - Updated release automation to publish ExpansionHunter JSON, UCSC bigBed, and
versioned autoSql schema assets.
Minor Changes
- Refactored
make-catalog.pyaround a declarative format registry. - Removed serializer side effects on input loci and replaced STRaglr's parsing of
Atarva text with sharedrepeat_bed_recordsdata. - Restored loci with partially missing pathogenicity thresholds to general BED,
STRaglr, and STRanger catalogs where formats support inference or missing
values. - Added evidence labels and evidence-based UCSC item colors.
- Added catalog documentation, file inventories, format references,
catalog-count explanation, and UCSC import guidance. - Added
ucsc-bedtobigbedto the project environment. - Added sitemap and robots.txt files for SEO.
Full Changelog: v2.26.0...v2.26.1