GateLab 0.7.6

Gate labels count what the plot draws

When more than one checked file is plotted, the percentage on a gate label, and the count in the gate list, are now pooled over the same files the cloud is drawn from, and the label says pooled beside the figure; its tooltip gives the file count. Before, both were the blue file's own, so a file with no events in a region read 0.0% beneath a dense cloud drawn from the others. While the other checked files are still being gated in the background the label says blue file only instead. A single plotted file keeps its bare, exact count. Quadrant labels carry the scope too; the Strategy and Illustration tabs keep their per-file counts.

For the R host (GateLabR 1.4.6)

An explicit Save to SCE now also sends every population's membership, for every hierarchy and every sample, so GateLabR can store it beside the workspace and R can read the whole tree back without re-gating. Autosaves send geometry only. The save message reports how many populations and hierarchies went across, or says when the R side stored none.

Colour by gains a colData group listing the SCE's factor, character and logical columns (up to 254 levels), such as a FlowSOM or CATALYST merge level, so cluster composition can be watched while a gate is dragged. A column's values are fetched once, when it is chosen; a palette fixed in the SCE metadata replaces the app's palette so the plot matches the analysis figures.

Neither of these changes the standalone browser build beyond the menu, which shows the colData group only under an R host.