v3.0.0

What's Changed

• refactor: Query classes and related code by @DaniBodor in #492
• refactor: unify buildgraph.py and build_graph functions for atom and residue level graphs by @DaniBodor in #507
• feature: separate max edge distance from interaction radius throughout by @DaniBodor in #504
• feature: improve Trainer and DeeprankDataset logic for production testing by @gcroci2 in #515
• build: switch to conda dssp installation by @gcroci2 in #549
• ci: implement ruff by @DaniBodor in #554
• ci: add GitHub action for testing the latest package version released on PyPi by @gcroci2 in #560
• docs: add Dockerfile and .yml for building conda env by @gcroci2 in #528
• docs: implement minor suggestions for JOSS paper by @gcroci2 in #538

Full Changelog: v2.1.2...v3.0.0