misc: ruff manual changes part2

[JDBetteridge]

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Codecov Report

❌ Patch coverage is 66.95005% with 311 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.96%. Comparing base (74243a7) to head (540a43f).
⚠️ Report is 6 commits behind head on JDBetteridge/ruff_manual_changes.

Files with missing lines	Patch %	Lines
devito/mpi/routines.py	0.00%	51 Missing ⚠️
tests/test_ir.py	36.36%	21 Missing ⚠️
tests/test_data.py	50.00%	18 Missing ⚠️
benchmarks/user/benchmark.py	5.88%	16 Missing ⚠️
devito/mpi/distributed.py	34.78%	15 Missing ⚠️
devito/arch/compiler.py	23.52%	12 Missing and 1 partial ⚠️
devito/types/dense.py	66.66%	10 Missing ⚠️
devito/data/data.py	38.46%	8 Missing ⚠️
devito/tools/data_structures.py	27.27%	8 Missing ⚠️
devito/types/grid.py	70.37%	8 Missing ⚠️
... and 66 more

Additional details and impacted files

@@                          Coverage Diff                          @@
##           JDBetteridge/ruff_manual_changes    #2814       +/-   ##
=====================================================================
+ Coverage                             45.06%   78.96%   +33.89%     
=====================================================================
  Files                                   248      248               
  Lines                                 51047    50826      -221     
  Branches                               4474     4393       -81     
=====================================================================
+ Hits                                  23003    40133    +17130     
+ Misses                                27084     9889    -17195     
+ Partials                                960      804      -156     

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