Release v2.0.6

What's Changed

• channel and file naming fix (1e019d6)
• bug fix: human virus contigs properly being mapped against all human infecting virus family reads (c26529f)
• ordering params for includeConfig params (014a75d)
• fixing results publishing for non-STAST processes (a90ef41)
• adding process directive labels to all processes so all tasks know what to request when running with an executor (b5fc851)
• improvement: delete intermediate fasta file in stat step to save space (118e899)
• deleting scripts (37d7a78)
• Merge branch 'main' of https://github.com/dhoconno/nvd (95372bd)
• adding steps that map extracted human virus reads back onto contigs and then counts mapped reads (dfdc315)

Contributors

Thanks to: Nicholas Minor,wkgardner

Version Information

• Version: 2.0.6
• Tag: v2.0.6
• Commit: 1e019d6

Installation

Using this release with Nextflow:

nextflow run dhoconno/nvd -r v2.0.6 \
    --tools all \
    --samplesheet your_samples.csv \
    --experiment_id your_experiment_id \
    [other parameters...]

Development setup:

git clone --branch v2.0.6 https://github.com/dhoconno/nvd.git
cd nvd
pixi install --frozen
pixi shell

Documentation

• Example Commands
• Contributor Guide
• Main README