Release v2.3.0

What's Changed

• prevent a breaking change in our params API and confirming that all nextflow.config params are exposed in the nvd wrapper CLI (bd02010)
• implementing a fully optional read preprocessing subworkflow that includes host read scrubbing, deduplication, and more (377be69)
• getting a Zenodo DOI

Contributors

Thanks to: Nicholas Minor

Version Information

• Version: 2.3.0
• Tag: v2.3.0
• Commit: bd02010

Installation

Using this release with Nextflow:

nextflow run dhoconno/nvd -r v2.3.0 \
    --tools all \
    --samplesheet your_samples.csv \
    --experiment_id your_experiment_id \
    [other parameters...]

Development setup:

git clone --branch v2.3.0 https://github.com/dhoconno/nvd.git
cd nvd
pixi install --frozen
pixi shell

Documentation

• Example Commands
• Contributor Guide
• Main README