Repository navigation
GEP2 v0.3
IMPORTANT: delete the previous GEP2_env conda environment and create a new one! (this should be the definitive now)
Everything got a version update
NomNom now on conda forge, requirements and GEP2 env simplified
New database dir logic
Blob-plot for contamination (and blobtools!)
FCS-GX
New analysis show on the md report
Readme updated
To-Do:
Update pretextsnapshot when new version is ready (bug ongoing)
Add compleasm to snailplot
Clean stdout
Improve logging
Code cleaning with AI tools
Add keep hic data for yahs?
Fix convert md to pdf
FASTK option (default will be Meryl)
Move from Inspector to Inspector_Gadget
Add BUSCO option? (default will be Compleasm)
Chrom Plots
T2T hints
EAR integration
GEP2 super report