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Version 2.1.0

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@ymd1022 ymd1022 released this 07 Jun 09:56
· 18 commits to master since this release
v2.1.0
55b4d7c
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Learn about vigilant mode.

Highlights

  • Updated the packaged human Visium demo.
  • Improved compatibility with recent Space Ranger outputs.
  • Simplified the configuration workflow.
  • Added integrated PhyloSOLID tree building.
  • Improved efficiency for several pipeline steps.

What's New

Pipeline and usability

  • Added updated demo resources and a dedicated demo tutorial.
  • Added cluster_method: default to reuse Space Ranger clustering results.
  • Simplified config templates for standard and advanced use cases.

Algorithm / processing updates

  • Improved clustering support for recent Space Ranger versions.
  • Added PhyloSOLID-based lineage tree construction as the phylogeny step.
  • Improved runtime efficiency for several processing steps.

Documentation improvements

  • Reworked configuration and default step parameter documentation.
  • Added demo instructions for downloading, configuring, and running the human Visium example.
  • Updated step documentation to include Step 8: PhyloSOLID Tree Building.

Notes

Assets 2
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