GATK Mutect2 in wolF

Info

• Docker used: gcr.io/broad-getzlab-workflows/gatk4_wolf:v6
• Reference files - Most come from GATK-best-practice bundle. See wolF/reference_files.py for details.
• Original WDL for GATK 4.1.4.1 Best Practice
• Genome build: hg38 or hg19

News

2024-03. Reimplemented the workflow with modern wolF design patterns

Acknowledgement

Thanks to Aaron for building robust canine backend, to Julian for creating wolF and quick & responsive support.