dyngen 1.1.0

• BREAKING CHANGE: Minimum R version bumped to 4.1.0. This enables use of the
  native pipe operator (|>) and lambda functions (\(x) ...) throughout.

• BUG FIX get_timings(): Use reframe() instead of summarise() to fix
  compatibility with dplyr >= 1.1.0.

• BUG FIX bblego_linear(): Fix broken pipe chain in doublerep2 type that
  caused backbone_bifurcating() examples to fail.

• MINOR CHANGE plot_simulation_expression(): Move ggrepel from Imports
  to Suggests, falling back to geom_text() when ggrepel is not installed.
  This fixes installation on older R versions where ggrepel >= 1.0.0
  requires R >= 4.5.0.

• MINOR CHANGE: Replace magrittr::%>% with the native pipe |> throughout
  the package.

• MINOR CHANGE: Replace deprecated dplyr::do() with reframe() or
  group_modify() throughout the package.

• MINOR CHANGE: Replace deprecated tidyr::gather() and dplyr::one_of()
  with tidyr::pivot_longer() and tidyselect::any_of() respectively.

• MINOR CHANGE: Replace deprecated ggplot2::aes_string() with aes()
  throughout plotting functions.

• MINOR CHANGE: Replace deprecated size aesthetic with linewidth for line
  geoms, and use scale_linewidth_manual() accordingly.

• MINOR CHANGE: Remove internal ggforce geom_edge_loop workaround that is
  no longer needed since ggforce >= 0.5.0.

• MINOR CHANGE: Use .data$ pronoun in data-masking contexts and bare names
  in tidyselect contexts, replacing the now-deprecated .data$ usage in
  select() and pull() calls.

• DOCUMENTATION: Fix unescaped braces in generate_kinetics() Rd file.

• CITATION: Replace deprecated citEntry() with bibentry().

• INFRASTRUCTURE: Update GitHub Actions workflows.

• INFRASTRUCTURE: Add tidyselect to Imports.

• DOCUMENTATION: Remove unused Docker vignette.

• MINOR CHANGE as_anndata(): Replace the anndata R package (Python-based) with
  anndataR (Bioconductor) for constructing AnnData objects. This removes the
  Python dependency from the anndata output format.