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v0.3.4

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@github-actions github-actions released this 05 May 15:47
· 111 commits to main since this release
v0.3.4
85ae4fe

Patch Release to sanitize some dose calculation behavoir:

  • Storage of multiple Dij's streamlined to reduce memory consumption
  • plot_slice function has a few additional parameters and sanitized slice titles
  • resample_image now explicitly states extrapolation behavior
  • streamlined kernel normalization within photon SVDPB engine
  • CI quality of life changes

Added

  • dose engines now have private flags and to guarantee sparse dij structure before finalization
  • Issue and Pull/Merge Request templates
  • default pre-commit hooks for line endings, case conflicts, merge conflicts, etc. Also added codespell, CITATION.cff verifyer and toml check
  • and now accept a generic (CT, dict, or ) instead of only a via the argument
  • gained and ( or ) options for grayscale windowing, replacing the previous
  • in now also accepts a
  • Jennifer Josephine Hardt added as author (CITATION.cff and pyproject.toml)
  • Added an option to to choose the extrapolator. Default is to use a nearest neighbor extrapolator, but individual values can beprovided as well.

Changed

  • New version of photons_Generic.mat basedata file can now be provided, allowing a version field alongside meta and data files within the machine struct. Version 2 requires correct kernel normalization (without implying a spacing in the convolution integral). photons_Generic.mat has been updated to version 2 with correct kernel normalization.
  • Photon dose calculation now does not rely on hardcoded convolution resolution integral normalization of machine kernels. Assumes that old kernels use hardcoded factor of 4 for 0.5 mm resolution (1/0.5^2).
  • Sparse structure now uses one shared index structure across dijs if possible
  • internally refactored into modular helpers (input validation, axis resolution, image/contour/overlay drawing, scale bar, finalization) for readability and reuse
  • Slice titles now follow the format (or when no image volume is provided)
  • / parameter renamed to and renamed to

Deprecated

  • and arguments to / still work as aliases for and but emit a

Fixed

  • CI Release Workflow now tests correctly on release commits without an [Unreleased] section in the Changelog.
  • CI Release Workflow now fetches tags correctly and supplies the correct release body from the tag message
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