1.0.1

Upgraded runtime to Java 21

Fix

Malformed annotations in SBML can cause invalid URIs that can cause errors during endpoint setup. 1.0.1 improve handling of such malformed URIs that include spaces and other special characters.

1.0

First out-of-beta release of SBML2RDF: A tool that converts a metabolic network in SBML format into RDF (turtle synthax).

new features

optional model enhancement for knowledge graph, adding new statements not explicitly defined in SBML, using SIO and SBO ontologies:

• links between same compounds in different compartments
• direct links between reactants and products of the same reaction (compound graph)
• side compounds (also known as, or closely related to : ubiquitous/auxiliary/currency/ancillary compounds) typing from a provided list.

0.1.1

Full Changelog: https://github.com/eMetaboHUB/SBML2RDF/commits/0.1.1