Herring spawning migration and bioenergetics 2016 year-class

A simple migration and bioenergetics model for herring spawning migration.

This R-script will replicate the analyses performed in the manuscript.

Getting the code

git clone https://github.com/eamousing/herringspawn.git

Software dependencies

The following software versions have been used. Older/newer versions may work but have not been tested.

• R version 4.3.1 (2023-06-16)
• tidyverse version 2.0.0
• ggplot2 version 3.4.3
• patchwork version 1.1.3
• maps version 3.4.1
• geosphere version 1.5.18
• xlsx version 0.6.5
• R.matlab version 3.7.0

Data dependencies

Running the analysis

To run the analysis from the terminal on UNIX/Linux:

Rscript herringspawn_main.R

Analysis output

The results of the migration/bioenergetics model will be placed in ./results as csv files. In addition, a plot will be produced (migration.tiff)summarizing the main results.

Licence disclaimer

The source code in this project is licensed under the terms of the MIT license. Data provided in the ./data is not subject to the MIT license.