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v0.1.4 (minor bug fix)

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@leepc12 leepc12 released this 20 Apr 21:21
· 123 commits to master since this release
v0.1.4
4951d3b
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Bug fix for URL contents decoding

Traceback (most recent call last):
  File "/usr/local/bin/caper", line 13, in <module>
    main()
  File "/usr/local/lib/python3.6/dist-packages/caper/cli.py", line 58, in main
    c.submit()
  File "/usr/local/lib/python3.6/dist-packages/caper/caper.py", line 384, in submit
    imports_file = self.__create_imports_zip_file_from_wdl(tmp_dir)
  File "/usr/local/lib/python3.6/dist-packages/caper/caper.py", line 847, in __create_imports_zip_file_from_wdl
    if CaperWDLParser(self._wdl).zip_subworkflows(zip_file):
  File "/usr/local/lib/python3.6/dist-packages/caper/caper_wdl_parser.py", line 75, in zip_subworkflows
    root_zip_dir=tmp_d)
  File "/usr/local/lib/python3.6/dist-packages/caper/caper_wdl_parser.py", line 189, in __recurse_subworkflow
    depth=depth + 1)
  File "/usr/local/lib/python3.6/dist-packages/caper/caper_wdl_parser.py", line 146, in __recurse_subworkflow
    imports = self.find_imports()
  File "/usr/local/lib/python3.6/dist-packages/caper/caper_wdl_parser.py", line 39, in find_imports
    CaperWDLParser.RE_PATTERN_WDL_IMPORT)
  File "/usr/local/lib/python3.6/dist-packages/caper/caper_wdl_parser.py", line 85, in __find_val
    for line in u.read().split('\n'):
  File "/usr/local/lib/python3.6/dist-packages/autouri/httpurl.py", line 113, in read
    return b.decode()
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
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