v1.2.2

Fixed

• medaka annotate would occasionally fail due to its input not being sorted by coordinate. This is fixed by explicitely sorting prior to the annotation step.

Changed

• Updated to wf-template v5.7.1 to maintain compliance with our latest wf-template standard, changing:
  • The README docs sections to move related protocols after inputs and outputs.
  • Links in the README to point at our new documentation website.
  • Our pre-commit configuration to resolve a dependency issue in our test infrastructure.