libboost library conflict with qiime2 #106
Description
Running sina -h produces:
/ebio/abt3_projects/software/dev/mdy/bin/cf-amplicon/.snakemake/conda/6546893098ee2fcb85e1d84f030c804c/lib/sina/bin/sina.real: error while loading shared libraries: libboost_program_options.so.1.54.0: cannot open shared object file: No such file or directory
conda env, which contains sina 1.3.0 and qiime 2021.11.0:
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
alsa-lib 1.2.3.2 h166bdaf_0 conda-forge
argcomplete 1.12.3 pyhd8ed1ab_2 conda-forge
argon2-cffi 21.1.0 py38h497a2fe_2 conda-forge
async_generator 1.10 py_0 conda-forge
attrs 21.2.0 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bibtexparser 1.1.0 py_0 conda-forge
binutils_impl_linux-64 2.36.1 h193b22a_2 conda-forge
binutils_linux-64 2.36 hf3e587d_10 conda-forge
bioconductor-biobase 2.50.0 r40hd029910_1 bioconda
bioconductor-biocgenerics 0.36.0 r40hdfd78af_1 bioconda
bioconductor-biocparallel 1.24.1 r40h399db7b_0 bioconda
bioconductor-biostrings 2.58.0 r40hd029910_1 bioconda
bioconductor-dada2 1.18.0 r40h399db7b_1 bioconda
bioconductor-delayedarray 0.16.3 r40hd029910_0 bioconda
bioconductor-genomeinfodb 1.26.4 r40hdfd78af_0 bioconda
bioconductor-genomeinfodbdata 1.2.4 r40hdfd78af_2 bioconda
bioconductor-genomicalignments 1.26.0 r40hd029910_1 bioconda
bioconductor-genomicranges 1.42.0 r40hd029910_1 bioconda
bioconductor-iranges 2.24.1 r40hd029910_0 bioconda
bioconductor-matrixgenerics 1.2.1 r40hdfd78af_0 bioconda
bioconductor-rhtslib 1.22.0 r40hd029910_1 bioconda
bioconductor-rsamtools 2.6.0 r40h399db7b_1 bioconda
bioconductor-s4vectors 0.28.1 r40hd029910_0 bioconda
bioconductor-shortread 1.48.0 r40h399db7b_1 bioconda
bioconductor-summarizedexperiment 1.20.0 r40hdfd78af_1 bioconda
bioconductor-xvector 0.30.0 r40hd029910_1 bioconda
bioconductor-zlibbioc 1.36.0 r40hd029910_1 bioconda
biom-format 2.1.10 py38h6c62de6_1 conda-forge
blast 2.12.0 pl5262h3289130_0 bioconda
bleach 4.1.0 pyhd8ed1ab_0 conda-forge
bokeh 2.4.2 py38h578d9bd_1 conda-forge
bowtie2 2.4.2 py38hc2f83ea_2 bioconda
brotli 1.0.9 h166bdaf_7 conda-forge
brotli-bin 1.0.9 h166bdaf_7 conda-forge
brotlipy 0.7.0 py38h0a891b7_1004 conda-forge
bwidget 1.9.14 ha770c72_1 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.6.15 ha878542_0 conda-forge
cachecontrol 0.12.10 pyhd8ed1ab_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.16.0 h6cf1ce9_1008 conda-forge
certifi 2022.6.15 py38h578d9bd_0 conda-forge
cffi 1.15.0 py38h3931269_0 conda-forge
chardet 4.0.0 py38h578d9bd_3 conda-forge
click 7.1.2 pyh9f0ad1d_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
coverage 6.3.3 py38h0a891b7_0 conda-forge
cryptography 35.0.0 py38h3e25421_2 conda-forge
curl 7.80.0 h2574ce0_0 conda-forge
cutadapt 3.5 py38hbff2b2d_1 bioconda
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cython 0.29.24 py38h709712a_1 conda-forge
dbus 1.13.6 h48d8840_2 conda-forge
deblur 1.1.0 py_2 bioconda
debugpy 1.5.1 py38hfa26641_1 conda-forge
decorator 4.4.2 py_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dendropy 4.5.2 pyh3252c3a_0 bioconda
dill 0.3.4 pyhd8ed1ab_0 conda-forge
dnaio 0.6.0 py38h4a8c8d9_0 bioconda
emperor 1.0.3 py38h578d9bd_0 conda-forge
entrez-direct 16.2 he881be0_1 bioconda
entrypoints 0.3 pyhd8ed1ab_1003 conda-forge
epa-ng 0.3.8 hd03093a_2 bioconda
expat 2.4.1 h9c3ff4c_0 conda-forge
fastcluster 1.1.26 py38h43a58ef_3 conda-forge
fasttree 2.1.10 0 bioconda
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.1 hba837de_1005 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.28.1 py38h497a2fe_0 conda-forge
freetype 2.10.4 h0708190_1 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
future 0.18.2 py38h578d9bd_5 conda-forge
gappa 0.7.0 h9a82719_1 bioconda
gcc_impl_linux-64 9.4.0 h03d3576_16 conda-forge
gcc_linux-64 9.4.0 h391b98a_10 conda-forge
gettext 0.19.8.1 h73d1719_1008 conda-forge
gfortran_impl_linux-64 9.4.0 h0003116_16 conda-forge
gfortran_linux-64 9.4.0 hf0ab688_10 conda-forge
glib 2.70.1 h780b84a_0 conda-forge
glib-tools 2.70.1 h780b84a_0 conda-forge
glpk 4.65 h9202a9a_1004 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
gneiss 0.4.6 py_0 bioconda
graphite2 1.3.13 h58526e2_1001 conda-forge
gsl 2.7 he838d99_0 conda-forge
gst-plugins-base 1.18.5 hf529b03_2 conda-forge
gstreamer 1.18.5 h9f60fe5_2 conda-forge
gxx_impl_linux-64 9.4.0 h03d3576_16 conda-forge
gxx_linux-64 9.4.0 h0316aca_10 conda-forge
h5py 3.3.0 nompi_py38h9915d05_100 conda-forge
harfbuzz 3.1.1 h83ec7ef_0 conda-forge
hdf5 1.10.6 nompi_h6a2412b_1114 conda-forge
hdmedians 0.14.2 py38h6c62de6_1 conda-forge
hmmer 3.1b2 3 bioconda
htslib 1.14 h9093b5e_0 bioconda
icu 68.2 h9c3ff4c_0 conda-forge
idna 2.10 pyh9f0ad1d_0 conda-forge
ijson 3.1.3 pyhd3deb0d_0 conda-forge
importlib-metadata 4.8.2 py38h578d9bd_0 conda-forge
importlib_metadata 4.8.2 hd8ed1ab_0 conda-forge
importlib_resources 5.4.0 pyhd8ed1ab_0 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipykernel 6.5.0 py38he5a9106_1 conda-forge
ipython 7.29.0 py38he5a9106_2 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.6.5 pyhd8ed1ab_0 conda-forge
iqtree 2.1.4_beta hdcc8f71_0 bioconda
isa-l 2.30.0 ha770c72_4 conda-forge
jbig 2.1 h7f98852_2003 conda-forge
jedi 0.18.1 py38h578d9bd_1 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
joblib 1.1.0 pyhd8ed1ab_0 conda-forge
jpeg 9d h36c2ea0_0 conda-forge
jq 1.6 h36c2ea0_1000 conda-forge
jsonschema 4.2.1 pyhd8ed1ab_1 conda-forge
jupyter_client 7.1.0 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.1 py38h578d9bd_1 conda-forge
jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge
jupyterlab_widgets 1.0.2 pyhd8ed1ab_0 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_15 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.3.2 py38h1fd1430_1 conda-forge
krb5 1.19.2 h3790be6_4 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
lerc 2.2.1 h9c3ff4c_0 conda-forge
libblas 3.9.0 13_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_7 conda-forge
libbrotlidec 1.0.9 h166bdaf_7 conda-forge
libbrotlienc 1.0.9 h166bdaf_7 conda-forge
libcblas 3.9.0 13_linux64_openblas conda-forge
libclang 11.1.0 default_ha53f305_1 conda-forge
libcurl 7.80.0 h2574ce0_0 conda-forge
libdeflate 1.7 h7f98852_5 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 h9b69904_4 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-devel_linux-64 9.4.0 hd854feb_16 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgfortran-ng 11.2.0 h69a702a_16 conda-forge
libgfortran5 11.2.0 h5c6108e_16 conda-forge
libglib 2.70.1 h174f98d_0 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
libiconv 1.16 h516909a_0 conda-forge
libidn2 2.3.2 h7f98852_0 conda-forge
liblapack 3.9.0 13_linux64_openblas conda-forge
libllvm10 10.0.1 he513fc3_3 conda-forge
libllvm11 11.1.0 hf817b99_3 conda-forge
libnghttp2 1.43.0 h812cca2_1 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.18 pthreads_h8fe5266_0 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.37 h21135ba_2 conda-forge
libpq 13.5 hd57d9b9_1 conda-forge
libsanitizer 9.4.0 h79bfe98_16 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libssh2 1.10.0 ha56f1ee_2 conda-forge
libstdcxx-devel_linux-64 9.4.0 hd854feb_16 conda-forge
libstdcxx-ng 11.2.0 he4da1e4_16 conda-forge
libtiff 4.3.0 hf544144_1 conda-forge
libunistring 0.9.10 h7f98852_0 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libuv 1.42.0 h7f98852_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.2.1 h7f98852_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.9.12 h72842e0_0 conda-forge
libxslt 1.1.33 h15afd5d_2 conda-forge
libzlib 1.2.11 h166bdaf_1014 conda-forge
llvmlite 0.36.0 py38h4630a5e_0 conda-forge
lockfile 0.12.2 py_1 conda-forge
lxml 4.6.4 py38hf1fe3a4_0 conda-forge
lz4 3.1.3 py38hebdc3cf_1 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
mafft 7.490 hec16e2b_1 bioconda
make 4.3 hd18ef5c_1 conda-forge
markupsafe 2.0.1 py38h497a2fe_1 conda-forge
matplotlib 3.5.0 py38h578d9bd_0 conda-forge
matplotlib-base 3.5.0 py38hf4fb855_0 conda-forge
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
mistune 0.8.4 py38h497a2fe_1005 conda-forge
more-itertools 8.11.0 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.2 py38h1fd1430_2 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.27 ha770c72_3 conda-forge
mysql-libs 8.0.27 hfa10184_3 conda-forge
natsort 8.0.0 pyhd8ed1ab_0 conda-forge
nb_conda_kernels 2.3.1 py38h578d9bd_1 conda-forge
nbclient 0.5.9 pyhd8ed1ab_0 conda-forge
nbconvert 6.3.0 py38h578d9bd_1 conda-forge
nbformat 5.1.3 pyhd8ed1ab_0 conda-forge
ncurses 6.2 h58526e2_4 conda-forge
nest-asyncio 1.5.1 pyhd8ed1ab_0 conda-forge
networkx 2.6.3 pyhd8ed1ab_1 conda-forge
nlopt 2.7.1 py38h4ff0c24_1 conda-forge
nodejs 16.12.0 h92b4a50_0 conda-forge
nose 1.3.7 py_1006 conda-forge
notebook 6.4.6 pyha770c72_0 conda-forge
nspr 4.32 h9c3ff4c_1 conda-forge
nss 3.72 hb5efdd6_0 conda-forge
numba 0.53.1 py38h8b71fd7_1 conda-forge
numpy 1.21.4 py38he2449b9_0 conda-forge
olefile 0.46 pyh9f0ad1d_1 conda-forge
oniguruma 6.9.7.1 h7f98852_0 conda-forge
openjdk 11.0.1 h516909a_1016 conda-forge
openjpeg 2.4.0 hb52868f_1 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.2.5 py38h1abd341_0 conda-forge
pandoc 2.16.2 h7f98852_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
pango 1.48.10 h54213e6_2 conda-forge
parso 0.8.2 pyhd8ed1ab_0 conda-forge
patsy 0.5.2 pyhd8ed1ab_0 conda-forge
pbzip2 1.1.13 0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pcre2 10.37 h032f7d1_0 conda-forge
perl 5.26.2 h36c2ea0_1008 conda-forge
perl-archive-tar 2.18 pl526_3 bioconda
perl-carp 1.38 pl526_3 bioconda
perl-common-sense 3.74 pl526_2 bioconda
perl-compress-raw-bzip2 2.087 pl526he1b5a44_0 bioconda
perl-compress-raw-zlib 2.087 pl526hc9558a2_0 bioconda
perl-exporter 5.72 pl526_1 bioconda
perl-exporter-tiny 1.002001 pl526_0 bioconda
perl-extutils-makemaker 7.36 pl526_1 bioconda
perl-io-compress 2.087 pl526he1b5a44_0 bioconda
perl-io-zlib 1.10 pl526_2 bioconda
perl-json 4.02 pl526_0 bioconda
perl-json-xs 2.34 pl526h6bb024c_3 bioconda
perl-list-moreutils 0.413 1 bioconda
perl-pathtools 3.75 pl526h14c3975_1 bioconda
perl-scalar-list-utils 1.52 pl526h516909a_0 bioconda
perl-threaded 5.26.0 0 bioconda
perl-types-serialiser 1.0 pl526_2 bioconda
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
picrust2 2.4.2 pyhdfd78af_0 bioconda
pigz 2.6 h27826a3_0 conda-forge
pillow 8.4.0 py38h8e6f84c_0 conda-forge
pip 21.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
pluggy 1.0.0 py38h578d9bd_3 conda-forge
prometheus_client 0.12.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.22 pyha770c72_0 conda-forge
psutil 5.8.0 py38h497a2fe_2 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
py 1.11.0 pyh6c4a22f_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pygments 2.10.0 pyhd8ed1ab_0 conda-forge
pynndescent 0.5.5 pyh6c4a22f_0 conda-forge
pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.6 pyhd8ed1ab_0 conda-forge
pyqt 5.12.3 py38h578d9bd_8 conda-forge
pyqt-impl 5.12.3 py38h0ffb2e6_8 conda-forge
pyqt5-sip 4.19.18 py38h709712a_8 conda-forge
pyqtchart 5.12 py38h7400c14_8 conda-forge
pyqtwebengine 5.12.1 py38h7400c14_8 conda-forge
pyrsistent 0.18.0 py38h497a2fe_0 conda-forge
pysocks 1.7.1 py38h578d9bd_5 conda-forge
pytest 6.2.5 py38h578d9bd_2 conda-forge
pytest-cov 3.0.0 pyhd8ed1ab_0 conda-forge
python 3.8.12 hb7a2778_2_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-isal 0.11.1 py38h497a2fe_1 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytz 2021.3 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py38h0a891b7_4 conda-forge
pyzmq 22.3.0 py38hfc09fa9_2 conda-forge
q2-alignment 2021.11.0 py38_0 qiime2/label/r2021.11
q2-composition 2021.11.0 py38_0 qiime2/label/r2021.11
q2-cutadapt 2021.11.0 py38_0 qiime2/label/r2021.11
q2-dada2 2021.11.0 py38_0 qiime2/label/r2021.11
q2-deblur 2021.11.0 py38_0 qiime2/label/r2021.11
q2-demux 2021.11.0 py38_0 qiime2/label/r2021.11
q2-diversity 2021.11.0 py38_0 qiime2/label/r2021.11
q2-diversity-lib 2021.11.0 py38_0 qiime2/label/r2021.11
q2-emperor 2021.11.0 py38_0 qiime2/label/r2021.11
q2-feature-classifier 2021.11.0 py38_0 qiime2/label/r2021.11
q2-feature-table 2021.11.0 py38_0 qiime2/label/r2021.11
q2-fragment-insertion 2021.11.0 py38_0 qiime2/label/r2021.11
q2-gneiss 2021.11.0 py38_0 qiime2/label/r2021.11
q2-longitudinal 2021.11.0 py38_0 qiime2/label/r2021.11
q2-metadata 2021.11.0 py38_0 qiime2/label/r2021.11
q2-mystery-stew 2021.11.0 py38_0 qiime2/label/r2021.11
q2-phylogeny 2021.11.0 py38_0 qiime2/label/r2021.11
q2-picrust2 2021.11 py38_0 gavinmdouglas
q2-quality-control 2021.11.0 py38_0 qiime2/label/r2021.11
q2-quality-filter 2021.11.0 py38_0 qiime2/label/r2021.11
q2-sample-classifier 2021.11.0 py38_0 qiime2/label/r2021.11
q2-taxa 2021.11.0 py38_0 qiime2/label/r2021.11
q2-types 2021.11.0 py38_0 qiime2/label/r2021.11
q2-vsearch 2021.11.0 py38_0 qiime2/label/r2021.11
q2cli 2021.11.0 py38_0 qiime2/label/r2021.11
q2galaxy 2021.11.0 py38_0 qiime2/label/r2021.11
q2templates 2021.11.0 py38_0 qiime2/label/r2021.11
qiime2 2021.11.0 py38_0 qiime2/label/r2021.11
qt 5.12.9 hda022c4_4 conda-forge
r-assertthat 0.2.1 r40hc72bb7e_2 conda-forge
r-backports 1.3.0 r40hcfec24a_0 conda-forge
r-base 4.0.5 hb93adac_3 conda-forge
r-bh 1.75.0_0 r40hc72bb7e_0 conda-forge
r-bitops 1.0_7 r40hcfec24a_0 conda-forge
r-brio 1.1.2 r40hcfec24a_0 conda-forge
r-callr 3.7.0 r40hc72bb7e_0 conda-forge
r-castor 1.6.5 r40h03ef668_0 conda-forge
r-cli 3.1.0 r40h03ef668_0 conda-forge
r-cluster 2.1.2 r40h859d828_0 conda-forge
r-colorspace 2.0_2 r40hcfec24a_0 conda-forge
r-crayon 1.4.2 r40hc72bb7e_0 conda-forge
r-desc 1.4.0 r40hc72bb7e_0 conda-forge
r-diffobj 0.3.5 r40hcfec24a_0 conda-forge
r-digest 0.6.28 r40h03ef668_0 conda-forge
r-ellipsis 0.3.2 r40hcfec24a_0 conda-forge
r-evaluate 0.14 r40hc72bb7e_2 conda-forge
r-fansi 0.5.0 r40hcfec24a_0 conda-forge
r-farver 2.1.0 r40h03ef668_0 conda-forge
r-formatr 1.11 r40hc72bb7e_0 conda-forge
r-futile.logger 1.4.3 r40hc72bb7e_1003 conda-forge
r-futile.options 1.0.1 r40hc72bb7e_1002 conda-forge
r-ggplot2 3.3.5 r40hc72bb7e_0 conda-forge
r-glue 1.5.0 r40hcfec24a_0 conda-forge
r-gtable 0.3.0 r40hc72bb7e_3 conda-forge
r-hwriter 1.3.2.1 r40hc72bb7e_0 conda-forge
r-isoband 0.2.5 r40h03ef668_0 conda-forge
r-jpeg 0.1_9 r40hcfec24a_0 conda-forge
r-jsonlite 1.7.2 r40hcfec24a_0 conda-forge
r-labeling 0.4.2 r40hc72bb7e_1 conda-forge
r-lambda.r 1.2.4 r40hc72bb7e_1 conda-forge
r-lattice 0.20_45 r40hcfec24a_0 conda-forge
r-latticeextra 0.6_29 r40hc72bb7e_1 conda-forge
r-lifecycle 1.0.1 r40hc72bb7e_0 conda-forge
r-magrittr 2.0.1 r40hcfec24a_1 conda-forge
r-mass 7.3_54 r40hcfec24a_0 conda-forge
r-matrix 1.3_2 r40he454529_0 conda-forge
r-matrixstats 0.61.0 r40hcfec24a_0 conda-forge
r-mgcv 1.8_38 r40he454529_0 conda-forge
r-munsell 0.5.0 r40hc72bb7e_1004 conda-forge
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