v1.1.2

Minor updates:

• Fix treatment of secondary structure dot bracket notation to match ARNIE (Python) and Eterna.JS
• Change name of repository to OpenKnotScoreMATLAB

v1.1.1

Minor updates, including filter_bps() function and documentation within MATLAB scripts.

Rename of repository to OpenKnotScoreLegacy to drive change to Python notebooks at https://github.com/tkaragianes/OpenKnotScorePipeline.

v1.1.0

OpenKnotScore scripts released with bioRxiv posting of the Ribonanza manuscript.

Notable updates include:

• Accelerate calc_openknot_score by allowing precompute of remove_singlet structures
• Update to handling RMDB rdats
• Scripts for calculating F1 scores.

Full Changelog: v1.0.0...v1.1.0

v1.0.0

Initial release of OpenKnotScore after adding README.

• explanation of the score
• MATLAB scripts to compute scores
• MATLAB scripts to input/output structures derived from templates, from ARNIE, from SHAPEknots or other structures in .csv format.