BSCAMPP v1.0.5

Note: Forwarded changes made in v1.0.4 and v1.0.4a as well.

1. Changed from using original sequence names from query input to using pseudo names (indexed from 1 to N, N the number of queries). This is to prevent issues with nontypical characters in sequence names, such as ":".
2. Added better parallelization for the placement phase. Now jobs can run in parallel to fully take advantage of more cores. By default, each job can use 2 cores (controlled by --cpus-per-job). The number of workers that can run in parallel is determined by max(1, num_cpus // cpus_per_job).
3. (v1.0.4) Supported .gz format input files for alignment.
4. (v1.0.4a) Removed redundant parameter --model since the user-provided info file is sufficient to run pplacer or epa-ng. Also this means that it is not needed to distinguish between nucleotide/protein sequences as long as the user provides the files correctly.
5. (v1.0.4a) Added a new test for using BSCAMPP on protein sequences, see examples/run_bscampp_prot.sh.