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FungMod 0.1.1

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@felixlaga felixlaga released this 01 Aug 17:32
· 8 commits to main since this release

FungMod 0.1.1 is the first PyPI-published alpha release of the registry-backed,
unit-aware virtual-experiment engine.

Install it with:

python -m pip install fungmod==0.1.1

Highlights:

  • three deterministic, executable release notebooks: zero-to-report, advanced
    capabilities, and five purified fungal beta-glucosidases on cellobiose;
  • one provenance-matched, no-refit comparison with nine digitized literature
    time-course observations;
  • generic coupled hydrolysis/substrate-transglycosylation with one
    provenance-backed Phanerochaete chrysosporium BGL1B configuration;
  • a minimal exploratory well-mixed fungal-process coupling API;
  • uniform Cartesian 2D/3D finite-volume reaction diffusion;
  • constant-activity-coefficient nonideal reversible thermodynamics;
  • independent-input variance-based global sensitivity with Saltelli
    first-order and Jansen total-order estimators;
  • a publication-oriented calibration evidence audit whose software pass never
    authorizes a publication claim; and
  • deterministic build-time staging of canonical package resources, with wheel
    byte-identity and isolated-install verification.

Scientific scope remains deliberately bounded. Source-organism labels do not
make the purified-enzyme showcases whole-fungus models. The time-course result
is a same-source consistency comparison, not independent validation, and its
digitization resolution is not experimental uncertainty. The fungal coupling
is software-tested and exploratory rather than organism-specific physiology.
Publication-grade biological calibration, empirical joint parameter
distributions, correlated-input sensitivity, dynamic fungal morphology, and
coupled-network thermodynamic optimization remain unavailable.

PyPI: https://pypi.org/project/fungmod/0.1.1/

Documentation: https://fungmod.readthedocs.io/

Full change record: https://github.com/felixlaga/FungMod/blob/v0.1.1/CHANGELOG.md