Quick Start

Quick Start

1. Launch the app

library(SeuratExplorer)
launchSeuratExplorer()

The dashboard opens in your default browser. All processing stays on your machine.

2. Load data

Open the Dataset tab and do one of the following:

• Choose A rds or qs2 file of Seurat Object — upload your processed object (default limit 20 GB; see Launch Options), or
• Download and Run a demo data — fetch a small demo dataset and load it automatically (see Demo Data).

Older Seurat objects are updated automatically on load; this may take a moment for very old objects.

A small Data Overview panel shows total cells, genes, clusters and assays once loaded.

3. Explore

Once data is loaded, the Explorer menu (sidebar) appears with all analysis pages — dimension-reduction plots, expression plots, marker/DEG analysis, annotation tools and more. See Interface Guide.

4. Save results

• Figures: download as PDF (what-you-see-is-what-you-get) from each plot page.
• Tables: download as CSV (DEGs, feature summary, cell metadata, cluster-name mappings, …).