Revert "Add remesh stability override test" #8

fermga · 2025-08-27T18:38:14Z

Reverts #6

netlify · 2025-08-27T18:38:18Z

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…implicados: [Autoorganizacion]\nInvariantes afectados: [#8]\nCambios clave: refactor multi_recompute_abs_max con defaultdict y comprensiones; nueva importación\nRiesgos/disonancias previstas: posible sobrecarga de memoria mitigada con pruebas\nMétricas: C(t) estable, Si n/a, νf n/a, fase n/a\nPruebas: alias_cache, alias_iterable, alias_accessor_usage, cached_abs_max_performance, metrics\nMapa de equivalencias: sin cambios

Intento: Centralizar la escritura en disco para reforzar coherencia de IO Operadores implicados: [Autoorganización] Invariantes afectados: [#8] Cambios clave: extracción de helper _write_to_fd, reutilización en escrituras atómicas/directas Riesgos/disonancias previstas: posible variación en sincronización de disco; mitigado manteniendo fsync en ruta atómica Métricas: sin cambio en C(t), Si, νf, fase Pruebas: tests existentes Mapa de equivalencias: sin cambios de API

Intento: simplifica la ordenación de nodos para mantener coherencia al calcular digests Operadores implicados: [Coherencia] Invariantes afectados: [#8] Cambios clave: reemplazo de tuplas por ordenación con clave y cálculo explícito de repr Riesgos/disonancias previstas: posible doble cálculo de representación; se contiene con cache LRU Métricas: C(t) sin cambio; Si sin cambio; νf sin cambio; fase sin cambio Pruebas: tests/test_cache_helpers.py Mapa de equivalencias: n/a

Operadores implicados: [Autoorganizacion] Invariantes afectados: [#8] Cambios clave: ajustar expectativas a CallbackSpec en pruebas Riesgos/disonancias previstas: ninguno Métricas: sin cambio Pruebas: test_register_callback, test_normalize_event_callbacks, test_ensure_callbacks, test_invoke_callbacks, test_callback_errors_limit, test_add_edge_callbacks, test_trace Mapa de equivalencias: ninguno

Intento: mejorar trazabilidad de callbacks fallidos en NetworkX Operadores implicados: [Recepción] Invariantes afectados: [#8] Cambios clave: - registra errores NetworkX antes de relanzar la excepción - prueba dedicada a _callback_errors con NetworkXError Riesgos/disonancias previstas: registro adicional pero controlado por _CALLBACK_LOCK Métricas: C(t), Si, νf, fase sin cambios Pruebas: tests/test_invoke_callbacks.py::test_invoke_callbacks_records_networkx_error Mapa de equivalencias: N/A

Operadores implicados: [Autoorganizacion] Invariantes afectados: [#8] Cambios clave: - se retira _alias_cache_lock y el contexto with - se documenta el lock interno de lru_cache Riesgos/disonancias previstas: posible condicion de carrera; contenida mediante el bloqueo interno de lru_cache y verificacion concurrente Metricas: C(t), Si, vf, fase sin cambios Pruebas: tests/test_alias_helpers_threadsafe.py Mapa de equivalencias: ninguno

Intento: Modernizar anotaciones de tipos para mejorar coherencia y simplificar importaciones Operadores implicados: [Autoorganizacion] Invariantes afectados: [#8] Cambios clave: remover Set de typing, usar set[str] en _warn_orjson_params_once Riesgos/disonancias previstas: ninguna; se mantiene compatibilidad con orjson Métricas: C(t) estable, Si estable, νf estable, fase estable Pruebas: tests/test_json_utils.py Mapa de equivalencias: n/a

Intento: centralizar la coherencia de la caché RNG Operadores implicados: [Autoorganizacion] Invariantes afectados: [#8] Cambios clave: añade _sync_cache_size y lo usa en make_rng y cache_enabled Riesgos/disonancias previstas: reactivación involuntaria de caché contenida con guardas existentes Métricas: C(t), Si, νf, fase sin cambios Pruebas: tests/test_rng_* (existentes) Mapa de equivalencias: n/a

Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - lazy-import kahan_sum inside collections_utils to avoid circular dependency Expected risks/dissonances: minor overhead from repeated imports, mitigated by Python module cache Metrics: C(t), Si, νf, phase unaffected Equivalence map: N/A

Operators involved: [Recursivity] Affected invariants: [#4, #8] Key changes: - Added _validated_history helper combining validate_window and ensure_history_deque - Updated push_glyph and recent_glyph to use helper - Added tests for helper behaviour Expected risks/dissonances: - Incorrect handling of zero window mitigated by explicit tests Metrics: C(t), Si, νf, phase unchanged Equivalence map: none

Intent: structure jitter state for reproducible coherence Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - Introduced JitterCache class to hold jitter sequence and graph caches - Refactored setup_jitter_cache and clear_rng_cache to use the instance - Exposed module-level singleton preserving prior API Expected risks/dissonances: possible stale cache references; mitigated via alias updates and tests Metrics: C(t) stable, deterministic sequences maintained Equivalence map: setup_jitter_cache(), clear_rng_cache() -> unchanged signatures

…excluding booleans Operators involved: [Coherence] Affected invariants: [#8] Key changes: - use numbers.Integral for window type check - add tests for numpy integer acceptance Expected risks/dissonances: none anticipated; bool exclusion preserved Metrics: C(t), Si, νf, phase unchanged Equivalence map: n/a

Operators involved: [Self-organization, Coherence] Affected invariants: [#8] Key changes: - add _node_repr_digest for joint representation and digest caching - refactor _node_repr, _hash_node and helpers to use single cache - adjust checksum tests for new API Expected risks/dissonances: cache invalidation regressions handled by tests Metrics: C(t) stable, Si unchanged, νf and phase unaffected Equivalence map: _hash_node(obj, repr_) -> _hash_node(obj)

Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - add README section on edge_version_update context manager Expected risks/dissonances: none; documentation only Metrics: C(t), Si, νf, phase unchanged Equivalence map: increment_edge_version -> edge_version_update

Operators involved: [Mutation] Affected invariants: [#8] Key changes: - introduce JitterCacheManager and expose manager instance - replace globals with manager methods and properties - update operators and tests to use manager interface Expected risks/dissonances: API consumers may need adjustment to manager-based access Metrics: C(t), Si, νf unchanged; deterministic jitter sequences Equivalence map: setup_jitter_cache->JITTER_MANAGER.setup; clear_rng_cache->JITTER_MANAGER.clear; _JITTER_SEQ->JITTER_MANAGER.seq

Operators involved: [Coupling] Affected invariants: [#8] Key changes: - extract _normalized_callbacks helper - reuse helper in registry and event normalization - test invalid entries are discarded Expected risks/dissonances: none Metrics: N/A Equivalence map: none

Intent: strengthen optional import coherence via bounded TTL cache Operators involved: [Self-organization, Transition] Affected invariants: [#8] Key changes: - replace OrderedDict with configurable TTLCache - simplify prune/record/discard using cache ops - delegate prune_failed_imports to cache expiration - adapt tests for TTL-based behaviour Expected risks/dissonances: TTL semantics diverge from manual timestamps; covered by tests Metrics: C(t), Si, νf, phase unchanged (stability maintained) Equivalence map: N/A

Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - merge warning and import locks into shared critical sections - factor failure message formatting Expected risks/dissonances: potential deadlock mitigated by consistent lock order Metrics: n/a Equivalence map: none

Intent: streamline safe_write coherence Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - Extract _write_file helper for open/write logic - Use helper in atomic and direct branches with shared try/except - Preserve error messages and fsync behavior Expected risks/dissonances: minimal; tmp file handling could vary per OS Metrics: C(t), Si, νf, phase unchanged Equivalence map: safe_write API unchanged

Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - Cache per-dict alias keys to avoid repeated scans - Reuse cached keys in get and set with size-based invalidation - Add tests verifying iteration reduction and cache invalidation Expected risks/dissonances: stale cache if dictionary mutated without size change Metrics: C(t), Si, νf unchanged Equivalence map: N/A

…rganization]\nAffected invariants: [#8]\nKey changes:\n- Replace strong registry dict with WeakValueDictionary guarded by _REGISTRY_LOCK\n- Add test verifying locks without references vanish from registry\nExpected risks/dissonances: relies on garbage collection timing; tests force gc to contain\nMetrics: C(t) stable; νf unchanged; phase unaffected\nEquivalence map: n/a

…ter reporting Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - accept precomputed frozenset in _warn_orjson_params_once - extract _format_ignored_params - reset warnings via clear_orjson_cache and adjust calls - add test ensuring unique warnings per combination Expected risks/dissonances: minimal risk of misfiring warnings; mitigated by tests verifying single emission Metrics: C(t) stable; Si, νf, phase unaffected Equivalence map: None

Intent: stabilize JSON parameter handling by reusing immutable defaults Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - add frozen DEFAULT_PARAMS for json serialization - reuse default params when options unchanged - test identity reuse of default params Expected risks/dissonances: minimal; ensures default reuse without altering behaviour Metrics: no change in C(t), Si, νf, phase expected Equivalence map: N/A

Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - Wrap NodoNX.from_graph cache in named lock tied to id(G) - Initialize new NodoNX inside critical section - Add multithreaded test exercising from_graph Expected risks/dissonances: slight contention when many threads create nodes Metrics: C(t), Si unchanged Equivalence map: N/A

Operators involved: [Coherence] Affected invariants: [#5, #8] Key changes: - add _neighbor_phase_mean_core - delegate neighbor_phase_mean_list and _neighbor_phase_mean to core - extend neighbor_phase_mean tests Expected risks/dissonances: refactor may mis-handle numpy/no numpy paths; covered by tests Metrics: C(t), Si, νf, phase unchanged; averaging more explicit Equivalence map: none

Intent: maintain deterministic caching of selector thresholds Operators involved: [Self-organization] Affected invariants: [#8] Key changes: - Introduced _sorted_items helper for stable mapping order - Applied helper for thr_sel and thr_def before caching - Added regression test ensuring cache ignores dict order Expected risks/dissonances: minimal; sorting overhead small Metrics: C(t) stable; Si, νf, phase unchanged Equivalence map: N/A

Create copilot-setup-steps.yml workflow to preconfigure the Copilot agent's development environment with TNFR dependencies and verification steps. Intent: Strengthen structural coherence by ensuring Copilot can explore, study, investigate, and develop TNFR implementations with proper tooling. Operators involved: Emission (AL) - initiating development workflow Coherence (IL) - stabilizing environment setup Key changes: - Created .github/workflows/copilot-setup-steps.yml - Configured Python 3.11 setup with pip caching - Installed core dependencies: test, numpy, yaml, orjson - Added verification steps to confirm TNFR installation - Enabled workflow_dispatch for manual testing - Auto-triggers on workflow file changes Expected benefits: - Faster Copilot startup (cached dependencies) - Reliable development environment (pre-installed deps) - Immediate validation capability (test infrastructure ready) - Alignment with TNFR mission: explore, study, investigate, develop Affected invariants: #8 (Controlled Determinism - reproducible environment) Metrics: Setup time expected to decrease, C(t) of development workflow ↑ Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>

Use `pip install -e .` to install TNFR directly from the repository source code (latest development version) instead of the older PyPI version. Add verification step to display installation location confirming it's from repo. Intent: Ensure Copilot works with the most advanced TNFR version for exploration, study, investigation, and development of the theory. Operators involved: Emission (AL) - generating from fresh source Coherence (IL) - stabilizing on correct version Key changes: - Changed from `pip install .` to `pip install -e .` (editable mode) - Added explicit comment: "Install TNFR directly from repository source code (NOT from PyPI)" - Added location verification in test step - Editable mode enables immediate reflection of code changes Benefits: - ✓ Latest development version (0.1.dev4 from repo vs older PyPI) - ✓ Editable install: changes in source immediately available - ✓ Clear verification: shows installation location - ✓ Copilot works with cutting-edge TNFR implementations Affected invariants: #8 (Controlled Determinism - correct version source) Metrics: Version freshness ↑, development iteration speed ↑ Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>

…storing structural integrity) Operators involved: Coherence (IL) - Stabilizes module structure through negative feedback Affected invariants: - #4 (Operator Closure): Preserved API compatibility via re-exports - #8 (Controlled Determinism): Deterministic import resolution - #10 (Domain Neutrality): No domain-specific assumptions introduced Key changes: - Created src/tnfr/validation/base.py: Isolated ValidationOutcome, Validator, SubjectT - Updated src/tnfr/validation/runtime.py: Import from .base instead of . - Updated src/tnfr/validation/__init__.py: Re-export from .base (removed duplicates) - Updated src/tnfr/validation/spectral.py: Import from .base - Added test_circular_import_fix.py: Verification test for complete import chain Expected risks/dissonances: None - structure strengthened, API preserved Metrics: - C(t): ↑ (module structure now coherent) - ΔNFR: ↓ (circular dependency eliminated) - Si: ↑ (stable import resolution) Equivalence map: - ValidationOutcome: validation.__init__ → validation.base → validation.__init__ (re-exported) - Validator: validation.__init__ → validation.base → validation.__init__ (re-exported) - API surface unchanged for external consumers Fixes #2926 circular import blocking CI/CD

…ction Intent: Restore PEP 621 compliance for Binder/builds (coherence in distribution) Operators involved: (Infrastructure stabilization) IL/Transition analog Affected invariants: #8 (reproducibility), #4 (closure via proper packaging) Key changes: - Sanitized project.authors removing unsupported 'orcid' subfield - Added [tool.tnfr.metadata] primary_author_orcid to retain identity traceability Expected risks/dissonances: None; pure metadata stabilizer Metrics: Build now passes local 'pip install .' without validation error

Intent: Increase test coverage for src/tnfr/sparse module from 0% to 65% Operators involved: Testing infrastructure (no runtime operators) Affected invariants: #8 (Controlled Determinism - reproducibility) Key changes: - Created tests/sparse/__init__.py and test_sparse_representations.py - Added 31 test cases across 7 test classes - Fixed IndentationError in src/tnfr/dynamics/integrators.py (line 874) - Fixed missing import in src/tnfr/physics/extended_canonical_fields.py - Fixed numpy 2.3.4 corruption (reinstalled 2.2.1) - Fixed scipy corruption (reinstalled 1.16.3) Test coverage: - CompactAttributeStore: 6 tests (defaults, vectorized ops, storage removal) - SparseCache: 7 tests (TTL expiration, LRU eviction, memory tracking) - SparseTNFRGraph: 8 tests (init, memory footprint, attributes) - MemoryEfficiency: 2 tests (sparse vs dense, scaling) - Integration: 2 tests (TNFR compatibility, reproducibility) - EdgeCases: 6 tests (zero nodes, invalid density, boundaries) - Performance: 2 tests (large graphs, access speed) Coverage: 65% (204 statements, 71 miss) Status: All 31 tests passing Expected risks/dissonances: Syntax errors fixed (integrators.py, extended_canonical_fields.py) Metrics before/after: - Test files: 488 → 490 (+2) - Health: 100/100 → 100/100 (maintained) - Coverage sparse module: 0% → 65%

Intent: Increase test coverage for src/tnfr/ontosim orchestration layer Operators involved: Testing infrastructure (no runtime operators) Affected invariants: #8 (Controlled Determinism), #1 (EPI as Coherent Form) Key changes: - Created tests/ontosim/__init__.py and test_ontosim_runner.py - Added 39 test cases across 10 test classes - All tests passing (39/39) Test coverage: - TestPrepareNetwork: 7 tests (initialization, history buffers, callbacks, ΔNFR hooks) - TestStep: 7 tests (single-step execution, attribute updates, custom dt) - TestRun: 6 tests (multi-step execution, zero steps, parameter propagation) - TestReproducibility: 3 tests (deterministic with seeds - Invariant #8) - TestIntegration: 3 tests (different topologies, mixed step/run, disconnected graphs) - TestEdgeCases: 6 tests (single node, empty graph, large graphs, unprepared handling) - TestHistoryTracking: 3 tests (buffer structure, maxlen, types) - TestCallbackIntegration: 2 tests (structure, custom callbacks) - TestParameterOverrides: 2 tests (DT override, multiple params, override_defaults flag) Key findings: - Node attributes use Unicode: 'νf' (not 'nu_f'), 'theta', 'EPI', 'Si' - Parameters: 'DT' (not 'DT_DEFAULT'), 'RANDOM_SEED' - History buffers exist but populate only with observers/callbacks - Time tracking not directly exposed in G.graph['t'] Status: All 39 tests passing Health: 100/100 maintained Expected risks/dissonances: None - all tests adapted to actual API Metrics before/after: - Test files: 490 → 492 (+2) - Health: 100/100 → 100/100 (maintained) - Coverage ontosim: TBD (needs coverage run)

Revert "Add remesh stability override test"

2168cfc

fermga merged commit 5010028 into main Aug 27, 2025
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fermga deleted the revert-6-codex/create-tests-for-aplicar_remesh_si_estabilizacion_global branch August 27, 2025 19:11

fermga mentioned this pull request Nov 9, 2025

[HIGH] NAV: Add comprehensive preconditions - ΔNFR bounds, regime checks, sequence validation #2863

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Implement NUL operator canonical ΔNFR densification dynamics #2862

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Add structural density metrics to NUL (Contraction) operator #2866

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Expand NUL operator documentation with canonical use cases and sequences #2868

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Revert "Add remesh stability override test" #8

Revert "Add remesh stability override test" #8

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fermga commented Aug 27, 2025

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Revert "Add remesh stability override test" #8

Revert "Add remesh stability override test" #8

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fermga commented Aug 27, 2025

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