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FiberHMM v1.3

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@mtcicero26 mtcicero26 released this 11 Nov 18:39
· 199 commits to main since this release
v1.3
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Learn about vigilant mode.

Added a new parameter, -e to train and apply model scripts. This allows the user to set a minimum level of methylation required for a read to be used in training or to be kept after the model application. This is helpful if there are a subset of reads with very low methylation due to experimental issues.

Adjusted apply and train model scripts to use the reference-based position of m6a instead of the read-based position. This resolves issues related to poorly aligned reads having methylations and footprints outside of the expected range.

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