0.3.0 (2023-07-29)
Release Notes
Chore
- simplifed center with new api.
- refactor a large part of the code base to reduce redudance. TODO simplify center and basemods with this new api.
- improve docs
- drop darkmode
- fix docs and fetch
- regex update
- readme
- clippy
- hide more deps under features for pyft
- example py-ft
- unify api anming for liftover, optimize for inclusion in pyft
- reduce number of copies for nuc and msp.
- move nuc and msp logic out of extract into ranges struct and simplify. We ran on a whole genome ft extract to confirm results dont change.
- readme
- clippy
- Release bio-io version 0.2.0
- Release bamlift version 0.2.0
Chore
- readme
- readme
- readme
- readme
- readme
- readme
- readme
New Features
- add qual to ft cetner, and clean the ft center code more
- adding ft center to the python module!
- Reorganize pyft api and docs
- adding liftover to pyft
- very large improvment in speed of lifting over ranges, some liftover results differ from before by 1bp but it is rare.
- change the result of liftovers to be an Option.
Commit Statistics
- 70 commits contributed to the release over the course of 7 calendar days.
- 7 days passed between releases.
- 31 commits were understood as conventional.
- 0 issues like '(#ID)' were seen in commit messages
Commit Details
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- Uncategorized
- Readme (
d11301f) - Readme (
b356b22) - Readme (
fe9dd43) - Readme (
b532eb0) - Readme (
2c4b6ef) - Readme (
ae12da9) - Readme (
9ca181d) - Readme (
5c2d004) - Readme (
f27c56d) - Readme (
67fc6eb) - Release fibertools-rs v0.3.0 (
668ff64) - Release bio-io version 0.2.0 (
6bb4c5c) - Change (
019e9de) - Change (
11c3915) - Change (
20d9aa7) - Change (
de36de7) - Release bamlift version 0.2.0 (
36a975a) - Change (
70c9606) - Change (
49871ce) - Change (
cbf0de8) - Change (
0a0c37b) - Change (
4a5e5c4) - Readme (
99aeada) - Improve fetch error msg (
6332770) - Update so pyft works with options results (
a09faa2) - Update so pyft works with options results (
f225f9d) - Change the result of liftovers to be an Option. (
9d07122) - Docs (
07882ea) - Docs (
776713b) - Change (
ad0340e) - Readme (
6595c36) - Add qual to ft cetner, and clean the ft center code more (
b9f4950) - Docs (
1a1f260) - Docs (
2ab1645) - Simplifed center with new api. (
6fe2beb) - Refactor a large part of the code base to reduce redudance. TODO simplify center and basemods with this new api. (
df3ffba) - Improve docs (
96b4fc0) - Adding ft center to the python module! (
96f251b) - Drop darkmode (
1436dbf) - Fix docs and fetch (
04b1e9b) - Clean (
1d5872d) - Reorganize pyft api and docs (
9da4fa3) - Check for sorted (
8fbdc7c) - Check for sorted (
624dd33) - Block index (
ab59d1d) - Regex update (
f73a36a) - Readme (
8bf2168) - Readme (
15d535a) - Readme (
aba1d75) - Readme (
9ea0b5f) - Readme (
69d87ea) - Readme (
970c41f) - Readme (
49180bc) - Readme (
c8a2ab4) - Readme (
168c951) - Readme (
f5a65a6) - Clippy (
9f71158) - Clippy (
b4278e4) - Adding liftover to pyft (
248bf4e) - Unify api anming for liftover, optimize for inclusion in pyft (
2e1fe93) - Unify api anming for liftover, optimize for inclusion in pyft (
1c32392) - Clean (
0e2a574) - Speed up and clean up approximate liftover and add a real test (
c1ac44e) - Update with ranges (
cae1a41) - Very large improvment in speed of lifting over ranges, some liftover results differ from before by 1bp but it is rare. (
6a695ec) - Hide more deps under features for pyft (
a80fe51) - Clean writes in center. (
0d19ac1) - Reduce number of copies for nuc and msp. (
3e6aa94) - Move nuc and msp logic out of extract into ranges struct and simplify. We ran on a whole genome ft extract to confirm results dont change. (
eea28d5) - Example py-ft (
c55fcc5)
- Readme (