Latest dev version updated merged into the main branch contain the following updates
20: Bugfix: One sample was removed from the DE analysis in the final report by accident.
19: Barplot legends work now also, when no biotypes are provided in the referene annotation
18: Overall statistics split now noFeature and noFeature, but used for novel miRNA
17: SOme if-clauses added for more stable finalReport execusion
16: Some default resource allocations added
15: Bugfix, in getJoinedLoci minimum coverage was >, but it should have been >= to meet correct settings
14: Bugfix, that crashed finalReport in case only two samples were used in the pipeline
13: tOption is now also used in the final report
12: Missing memory allocation in one rule was added.
11: Bugfix, server-config did not receive the project path, if not given explicitely in config file
10: Added samtools_nonTRNA_reads_phix_flagstats to default resource allocation
9: Added samtools_concatenated_reads_tRNA_flagstats to the dedicated resource allocations
8: Added featureCounts options to account for non-default gtf file in quantification (-t and -g options)
7: Additional server resources added to the server_config file
6: Option for DE testing with edgeR added
5: sampleInfo-file option added
4: Config allows now relatives PATHs and adjustes them tot eh current project folder
3: Parameter for minimum coverage for novel miRNA detection added
2: Quantification table for reference counts added
1: New dev branch, identical to 0.10