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LIVIA v0.1

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@flyark flyark released this 24 Mar 22:26
· 315 commits to main since this release
v0.1
c81749f

Local Interaction VIsualization and Analysis tools for protein structure predictions.

Pages

  • Prediction Analysis — General-purpose analysis for AlphaFold2/AF3/ColabFold/Boltz/Chai-1/OpenFold3
  • FlyPredictome — Drosophila protein-protein interaction analysis from FlyPredictome
  • Ortholog Predictome — Ortholog interaction predictions from FlyPredictome
  • AlphaFold DB Dimer — Two-chain complex analysis from AlphaFold Protein Structure Database
  • Monomer Subdomain — Single-chain subdomain interaction analysis from AlphaFold Protein Structure Database

Features

  • Interaction residue detection (LIR / cLIR)
  • iLIS / iLIA / iLISA calculation
  • Mol* 3D structure viewer with custom coloring
  • ChimeraX and PyMOL script generation with multiple color modes
  • Interactive sequence viewer, contact maps, chord diagrams
  • Color presets: gradient, solid, high contrast
  • Show complete structure toggle
  • Gray non-LIR option for highlighting interacting residues
  • Multi-prediction folder support with job selector
Assets 2
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