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Adds some clarifications and fixes to the paper based on previous CodeRabbit review.

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📥 Commits

Reviewing files that changed from the base of the PR and between ce53aba and 8dc4b7f.

📒 Files selected for processing (1)
  • aion-holography/sections/rmg.tex (3 hunks)

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Summary by CodeRabbit

  • Documentation

    • Clarified derivation-graph semantics and RMG morphism definitions with expanded notation and state descriptions
    • Added mathematical notation macros for improved documentation consistency
  • Style

    • Standardized author name formatting in bibliography entries
    • Updated punctuation in temporal concepts descriptions for consistency
  • Chores

    • Removed obsolete documentation file

✏️ Tip: You can customize this high-level summary in your review settings.

Walkthrough

Standardized BibTeX author formatting; clarified microstep/derivation-graph finiteness and tick monotonicity; tightened reconstruction/determinism wording; expanded RMG morphism to include a discrete Atom category and recursive morphism components; added LaTeX macros \Hom and \id; replaced two hyphenated time-model mentions with comma-separated form; removed todo.md.

Changes

Cohort / File(s) Summary
Bibliography formatting
aion-holography/references.bib
Reformatted author fields from "GivenName Surname" to "Surname, GivenName" for entries EhrigLowe1997, vanOostrom1994, CoeckeDuncan2011, Wolfram2020, Rissanen1978, RossRMG2025, RossAIONCalculus2025, ross_universal_charter_v1.
Derivation graph semantics
aion-holography/sections/holography.tex
Made microstep edges explicit (values flow S_j → S_{j+1}); stated RMG states are finite with n+1 states per derivation (finite nodes, acyclic via strictly increasing tick indices); tightened reconstruction/determinism wording (successors unique up to isomorphism under deterministic tick semantics; internal interleavings yield isomorphic successors).
Time-model wording
aion-holography/sections/multiway_ruliad.tex, aion-holography/sections/discussion.tex
Replaced hyphenated "Chronos--Kairos--Aion" with comma-separated "Chronos, Kairos, Aion" (punctuation/style only).
RMG morphisms & notation
aion-holography/sections/rmg.tex
Introduced discrete category P for atomic payloads (Ob(P)=P, only identity morphisms); defined Hom_RMG(Atom(p),Atom(p')) as singleton iff p=p'; declared Atom: P → RMG faithful; specified composite morphism components f_v and f_e where f_e is defined recursively by structural depth; clarified U as RMG universe and expanded Hist(U,R) description.
Macros
aion-holography/macros.tex
Added \DeclareMathOperator{\Hom}{Hom} and \newcommand{\id}{\mathrm{id}}.
Removed draft notes
aion-holography/todo.md
Deleted todo.md (removal of extensive draft content, notes, and editorial material).

Sequence Diagram(s)

(omitted — changes are documentation/notation edits and do not alter runtime control flow)

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

  • Focus review on aion-holography/sections/rmg.tex for correctness of the recursive definition of f_e, composition/identity laws, and the stated faithfulness of Atom: P → RMG.
  • Verify aion-holography/sections/holography.tex for exact claims about n+1 states, tick monotonicity, and the determinism/isomorphism wording.
  • Check aion-holography/references.bib for correct BibTeX surname formatting and necessary escaping (e.g., "van" prefixes, L{"o}we).
  • Confirm removal of aion-holography/todo.md did not break internal references or cross-links.

Possibly related PRs

  • Aion holography #1 — Edits touch the same LaTeX sources and BibTeX entries (rmg.tex, holography.tex, macros.tex, references.bib); likely closely related formatting and notation adjustments.

"Five names now greet the comma's law,
atoms carved small with identity's draw.
Ticks march forward, graphs keep their line,
a draft erased — the notes decline.
Hom and id stand trimmed, exact, and raw."

Pre-merge checks and finishing touches

✅ Passed checks (3 passed)
Check name Status Explanation
Title check ✅ Passed The title 'fix: clarifications and touch-ups' accurately reflects the PR's substantive changes—clarifying semantics in multiple sections, updating notation, and refactoring formatting across the codebase.
Description check ✅ Passed The description directly addresses the PR's purpose: 'Adds some clarifications and fixes to the paper based on previous CodeRabbit review' aligns with the actual changes throughout multiple LaTeX and BibTeX files.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

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Actionable comments posted: 6

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)
aion-holography/references.bib (1)

1-90: CRITICAL: Incomplete author formatting standardization.

You've updated five entries to use the standard BibTeX "Last, First" format, which is correct and commendable. However, the standardization is incomplete:

Still using "First Last" format:

  • Line 52: author = {James Ross} should be author = {Ross, James}
  • Line 59: author = {James Ross} should be author = {Ross, James}
  • Line 84: author = {James Ross} should be author = {Ross, James}

Already correct:

  • Line 66: author = {Lack, Steven and Soboci{\'n}ski, Pawel}
  • Line 77: Multi-author entry already using correct format ✓

While BibTeX can often handle "First Last" for single authors, the explicit "Last, First" format is the standard and ensures:

  1. Consistency across all entries
  2. Correct behavior with all bibliography styles
  3. Maintainability when editing author names

Since you've committed to this standardization for five entries, you must complete it for all remaining entries for true consistency.

Apply this diff to complete the standardization:

 @misc{RossRMG2025,
-  author = {James Ross},
+  author = {Ross, James},
   title  = {Recursive Metagraphs: DPOI Semantics, Confluence, Hypergraph Embedding, and Rulial Distance},
   year   = {2025},
   note   = {Technical report}
 }
 
 @misc{RossAIONCalculus2025,
-  author = {James Ross},
+  author = {Ross, James},
   title  = {The {AION} Calculus},
   year   = {2025},
   note   = {Working note}
 }

 @misc{ross_universal_charter_v1,
-  author       = {James Ross},
+  author       = {Ross, James},
   title        = {Universal Charter: A Living Covenant for All Forms of Being Across Substrate, Time, and Dimension},
   howpublished = {\url{https://github.com/universalcharter/universal-charter}},
   note         = {Version 1.0.0 (First Flame), commit 849d9ca},
   year         = {2025},
   month        = {June},
 }

</invoke_comment_end -->

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📥 Commits

Reviewing files that changed from the base of the PR and between 56742e2 and f8f5d33.

📒 Files selected for processing (4)
  • aion-holography/references.bib (5 hunks)
  • aion-holography/sections/holography.tex (2 hunks)
  • aion-holography/sections/multiway_ruliad.tex (1 hunks)
  • aion-holography/sections/rmg.tex (3 hunks)
⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (1)
  • GitHub Check: build-holography
🔇 Additional comments (1)
aion-holography/sections/rmg.tex (1)

174-175: LGTM: Enhanced notation description.

The expansion from "history category" to "history category on a universe $U$ of RMG states" significantly improves clarity. This makes explicit that $U$ is a collection of RMG states and that $\Hist(U,R)$ is constructed from this collection.

This pairs well with the line 160 notation update, though both rely on the reader understanding what constitutes a "universe" (see comment on line 160).

</invoke_comment_end -->

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coderabbitai bot previously approved these changes Nov 23, 2025
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Actionable comments posted: 3

📜 Review details

Configuration used: CodeRabbit UI

Review profile: ASSERTIVE

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between f6dee50 and b28379f.

📒 Files selected for processing (5)
  • aion-holography/macros.tex (1 hunks)
  • aion-holography/references.bib (7 hunks)
  • aion-holography/sections/discussion.tex (1 hunks)
  • aion-holography/sections/holography.tex (2 hunks)
  • aion-holography/sections/rmg.tex (3 hunks)
🔇 Additional comments (4)
aion-holography/references.bib (1)

2-59: Bibliography author-name normalization looks consistent and correct

The switch to Surname, Given for all affected entries (including the “van” particle in van Oostrom, Vincent) is stylistically consistent and plays nicely with BibTeX name parsing. No technical or formatting issues from these edits.

Also applies to: 83-89

aion-holography/macros.tex (1)

9-10: Category-theory macros are idiomatic; just ensure package/macro hygiene

The \Hom and \id definitions are standard and align with their usage in rmg.tex. No issues with the definitions themselves.

Two small hygiene checks:

  • Make sure a package providing \DeclareMathOperator (typically amsmath) is loaded in the preamble.
  • Confirm there isn’t an existing \id macro from another package/class that you’re unintentionally overriding.
aion-holography/sections/holography.tex (1)

178-183: Determinism + tick-level confluence wording is now crisp

Splitting the sentence and introducing “Furthermore” makes the logic much clearer:

  • Determinism gives uniqueness of each $S_{i+1}$ (up to isomorphism).
  • Tick-level confluence guarantees any compatible interleaving of concurrent matches leads to an isomorphic successor.

This aligns cleanly with the earlier theorem statement and the reconstruction definition.

aion-holography/sections/rmg.tex (1)

163-181: “RMG universe” and notation summary are now clear and internally consistent

The updated notation row and the follow-up sentences finally pin down the universe story:

  • $\mathcal{U} = (G;\alpha,\beta)$ is explicitly a single RMG state with $\mathcal{U} \in U$.
  • An “RMG universe $U$” is clearly described as a collection of RMG states related by rewriting.
  • The note that $U$ always denotes such a universe, and that $\Hist(U,R)$ is the history category on a universe $U$ of RMG states, ties back cleanly to later sections.

This resolves the earlier ambiguity about what $U$ and $\mathcal{U}$ denote without introducing any new notational weirdness.

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Actionable comments posted: 1

📜 Review details

Configuration used: CodeRabbit UI

Review profile: ASSERTIVE

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between b28379f and ade00dc.

📒 Files selected for processing (3)
  • aion-holography/sections/discussion.tex (1 hunks)
  • aion-holography/sections/holography.tex (2 hunks)
  • aion-holography/sections/rmg.tex (3 hunks)
⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (1)
  • GitHub Check: build-holography
🔇 Additional comments (5)
aion-holography/sections/discussion.tex (1)

73-75: Chronos–Kairos–Aion triad phrasing is finally clean.

The added “and” makes the triad grammatically correct while keeping the comma-separated style; no further nits here.

aion-holography/sections/holography.tex (2)

30-47: Derivation-graph finiteness/acyclicity argument is now mathematically airtight.

You’ve finally made all the implicit steps explicit: each microstep is $S_j \Rewrite^{\mu_j} S_{j+1}$, edges go strictly from $S_j$ to $S_{j+1}$, the union of $n!+!1$ finite states bounds node count, and strictly increasing tick indices kill cycles. The immutability story now lines up perfectly with the provenance-edge direction.


178-184: Reconstruction determinism + confluence phrasing is precise and no longer syntactically awkward.

Splitting the sentence so that determinism gives uniqueness of $S_{i+1}$ and confluence is introduced with “Furthermore” removes the bogus “while” contrast and cleanly separates the two guarantees; the math matches the concurrency theorem assumptions.

aion-holography/sections/rmg.tex (2)

59-72: RMG morphism base-case + discrete category are now categorically respectable.

This fixes the earlier mess: $\mathbf{P}$ is explicitly discrete, the atomic hom-sets are defined in $\RMG$ with $\Hom_{\RMG}$ and $\id_{\mathrm{Atom}(p)}$, and Atom:$\mathbf{P}\to\RMG$ being faithful is now an immediate consequence. The construction is mathematically clean and LaTeX-safe.


164-182: “RMG universe” notation is now defined and consistent with $\Hist(U,R)$.

The table row plus the follow-up sentence finally pin down $U$ as “a collection of RMG states related by rewriting” with $\mathcal{U}\in U$, and the revised “history category on a universe $U$ of RMG states” description for $\Hist(U,R)$ is aligned with that. This removes the prior ambiguity between gothic $\mathcal{U}$ and script $U$ without introducing new notation leaks.

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Actionable comments posted: 5

📜 Review details

Configuration used: CodeRabbit UI

Review profile: ASSERTIVE

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between ade00dc and ce53aba.

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  • aion-holography/sections/rmg.tex (3 hunks)

coderabbitai[bot]
coderabbitai bot previously approved these changes Nov 23, 2025
@flyingrobots flyingrobots merged commit 53e886a into main Nov 23, 2025
1 of 2 checks passed
@flyingrobots flyingrobots deleted the fix/touch-ups branch November 23, 2025 22:52
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