Name	Name	Last commit message	Last commit date
Latest commit History 3 Commits
DORF_processing	DORF_processing
clade_models	clade_models
clade_models_v2	clade_models_v2
.gitignore	.gitignore
ANME_CommScores.ipynb	ANME_CommScores.ipynb
ANME_CommScores_org.ipynb	ANME_CommScores_org.ipynb
ANME_FVA.ipynb	ANME_FVA.ipynb
ANME_orthoMCL.png	ANME_orthoMCL.png
ANME_steadycom1.ipynb	ANME_steadycom1.ipynb
ANMEpan-SRBpan_community.xml	ANMEpan-SRBpan_community.xml
Chadwick_etal_PLOSBIO_2022.pdf	Chadwick_etal_PLOSBIO_2022.pdf
DOE_FINAL_proposal_wRefs_May17_2019.pdf	DOE_FINAL_proposal_wRefs_May17_2019.pdf
DOE_Final_proposal_2022.pdf	DOE_Final_proposal_2022.pdf
Digraph.gv	Digraph.gv
Digraph.gv.svg	Digraph.gv.svg
ISME_poster_2022_final.pdf	ISME_poster_2022_final.pdf
KBase_mapped_genomes.csv	KBase_mapped_genomes.csv
KBase_mapped_genomes2.csv	KBase_mapped_genomes2.csv
Poster_figures.ipynb	Poster_figures.ipynb
README.md	README.md
SRB_GTDBTK_output.csv	SRB_GTDBTK_output.csv
SRB_gene_genomeIDs.ipynb	SRB_gene_genomeIDs.ipynb
SRB_orthoMCL.png	SRB_orthoMCL.png
Supplementary_Table_5_Protein_accession_for_syntrophic_SRB_EET_operons.xlsx	Supplementary_Table_5_Protein_accession_for_syntrophic_SRB_EET_operons.xlsx
Supplementary_Table_8_Cobalamin_biosynthesis_genes.xlsx	Supplementary_Table_8_Cobalamin_biosynthesis_genes.xlsx
Syntropic_SRB_Andrew.xlsx	Syntropic_SRB_Andrew.xlsx
Table_5.csv	Table_5.csv
Table_8.csv	Table_8.csv
Victoria's ANME annotations.png	Victoria's ANME annotations.png
Victoria's ANME annotations_cropped.png	Victoria's ANME annotations_cropped.png
amalgamated_gene_functions.csv	amalgamated_gene_functions.csv
anme_clades_output.csv	anme_clades_output.csv
anme_clades_output.html	anme_clades_output.html
anme_output.csv	anme_output.csv
anme_output.html	anme_output.html
anme_syntrophy_exchanges.csv	anme_syntrophy_exchanges.csv
anme_syntrophy_fluxes.csv	anme_syntrophy_fluxes.csv
clade_models.tar.gz	clade_models.tar.gz
clade_models_v2.tar.gz	clade_models_v2.tar.gz
cross_feeding.csv	cross_feeding.csv
cross_feeding_diagram.svg	cross_feeding_diagram.svg
ete.ipynb	ete.ipynb
gene_genome_mapping.json	gene_genome_mapping.json
gene_genome_mapping2.json	gene_genome_mapping2.json
genome_mapping_counts.json	genome_mapping_counts.json
genome_mapping_counts2.json	genome_mapping_counts2.json
journal.pbio.3001508.s018.xlsx	journal.pbio.3001508.s018.xlsx
model_pan_anme_genome_scale.json	model_pan_anme_genome_scale.json
model_pan_srb_genome_scale.json	model_pan_srb_genome_scale.json
mscompatability.log	mscompatability.log
parsing_gene_functions.ipynb	parsing_gene_functions.ipynb
total_GeneID_function.csv	total_GeneID_function.csv
~$Syntropic_SRB_Andrew.xlsx	~$Syntropic_SRB_Andrew.xlsx

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Last commit message

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3 Commits

ANME_CommScores.ipynb

ANME_CommScores_org.ipynb

ANME_FVA.ipynb

ANME_orthoMCL.png