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5_Gene set enrichment

Olivia Waltner edited this page Mar 31, 2023 · 7 revisions

Gene set enrichment is a widely used analysis to get a sense of what cells are doing. There are many packages out there, so we listed the packages/tutorials we have tried and example code of what we frequently use.

Tutorials

clusterProfiler:

piano

scPubR

fgsea

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