error in running command

[aguang]

I've tried to troubleshoot this for a while, but I simply cannot get future.batchtools to work here. I also don't see this error in any of the other issues or anywhere. What is going wrong?

> library("future.batchtools")
Loading required package: parallelly
Loading required package: future
> plan(batchtools_slurm)
> x %<-% { Sys.sleep(5); 3.14 }
Error: Failed to submit BatchtoolsSlurmFuture (<none>). The reason was: error in running command
TROUBLESHOOTING INFORMATION:
batchtools::submitJobs() was called with the following 'resources' argument:
 list()

Additional output:

Error in system2(command = sys.cmd, args = sys.args, stdin = stdin, stdout = TRUE,  : 
  error in running command

[HenrikBengtsson]

I'm not sure why it's not mentioning which command it fails to launch. Anyway, please retry with the develop version;

remotes::install_github("futureverse/future.batchtools", ref="develop")

I've verified that it all works on a Slurm cluster that I've got access to, e.g.

library(future)
plan(future.batchtools::batchtools_slurm)

f <- future(Sys.getenv("SLURM_JOB_NAME"), label = "future.batchtools-test")
value(f)
#> [1] "future.batchtools-test"

[HenrikBengtsson]

future.batchtools 0.20.0 is now on CRAN. I'll close this issue. Please open a new one, if you still experience issues. Also, the documentation and built-in templates have improved a lot, so make sure to look at https://future.batchtools.futureverse.org/.