It's this issue: pysam-developers/pysam#1350
This affects our VCF tests. I think we can probably turn off pytest-cov in CI anyway because we aren't doing anything with the test coverage reporting.
It seems like the pysam devs have identified a fix (the actual issue relates to a new change in Cython and apparently setting a different flag during build can fix it) so it might be ok to do nothing for now and wait for them to issue a new release.
It's this issue: pysam-developers/pysam#1350
This affects our VCF tests. I think we can probably turn off pytest-cov in CI anyway because we aren't doing anything with the test coverage reporting.
It seems like the
pysamdevs have identified a fix (the actual issue relates to a new change in Cython and apparently setting a different flag during build can fix it) so it might be ok to do nothing for now and wait for them to issue a new release.