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v1.3 release candidate #418

Merged
merged 108 commits into from
Apr 16, 2023
Merged

v1.3 release candidate #418

merged 108 commits into from
Apr 16, 2023

Commits on Mar 3, 2022

  1. update CODEOWNERS

    ahwagner committed Mar 3, 2022
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  3. absolute CN docs

    ahwagner committed Mar 3, 2022
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Commits on Mar 6, 2022

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Commits on Mar 8, 2022

  1. add docs

    ahwagner committed Mar 8, 2022
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  2. build artifacts

    ahwagner committed Mar 8, 2022
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Commits on Mar 10, 2022

  1. Merge pull request #382 from ga4gh/issue-277

    relative copy number
    ahwagner authored Mar 10, 2022
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Commits on Mar 11, 2022

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Commits on Mar 14, 2022

  1. Merge pull request #383 from ga4gh/update-validation

    Update validation models for Copy Number variation
    korikuzma authored Mar 14, 2022
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Commits on Mar 15, 2022

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  2. Merge pull request #384 from ga4gh/sequence-order

    Fix Allele state type priority
    jsstevenson authored Mar 15, 2022
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Commits on Mar 24, 2022

  1. closes 386

    ahwagner committed Mar 24, 2022
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  4. update python version

    ahwagner committed Mar 24, 2022
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Commits on Mar 28, 2022

  1. Merge pull request #387 from ga4gh/issue-386

    386: revise base64url description
    ahwagner authored Mar 28, 2022
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Commits on Apr 9, 2022

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Commits on Apr 13, 2022

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Commits on Apr 14, 2022

  1. Merge pull request #390 from ga4gh/issue-389-add-default

    Add default value for types + update readme for using smoketests
    ahwagner authored Apr 14, 2022
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Commits on Jul 1, 2022

  1. C & P error fix in CytobandInterval

    The description for `end` used `start` ... No code change.
    mbaudis authored Jul 1, 2022
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  2. Merge pull request #392 from mbaudis/patch-1

    C & P error fix in CytobandInterval
    larrybabb authored Jul 1, 2022
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Commits on Jul 11, 2022

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  3. add Genotype

    ahwagner committed Jul 11, 2022
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Commits on Jul 12, 2022

  1. add defaults

    ahwagner committed Jul 12, 2022
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  2. squash that bug

    ahwagner committed Jul 12, 2022
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  5. genotype prefix

    ahwagner committed Jul 12, 2022
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Commits on Jul 24, 2022

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Commits on Jul 29, 2022

  1. update Genotype definition

    ahwagner committed Jul 29, 2022
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Commits on Sep 12, 2022

  1. update docs

    ahwagner committed Sep 12, 2022
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  2. update tests

    ahwagner committed Sep 12, 2022
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  3. remove unused imports

    ahwagner committed Sep 12, 2022
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  4. add definition

    ahwagner committed Sep 12, 2022
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  5. update inheritance model

    ahwagner committed Sep 12, 2022
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  6. update note

    ahwagner committed Sep 12, 2022
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  7. remove note intro

    ahwagner committed Sep 12, 2022
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  8. reverse the VRS

    ahwagner committed Sep 12, 2022
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Commits on Sep 13, 2022

  1. addresses #394 (comment)

    ahwagner committed Sep 13, 2022
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Commits on Oct 3, 2022

  1. closes #401

    ahwagner committed Oct 3, 2022
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  2. fix: get smoketests to pass

    - update python-jsonschema-objects version to >=0.4.0
    - fix typo in CytobandInterval end
    - Regenerate vrs yaml/json to update members to have 2 min items
    korikuzma committed Oct 3, 2022
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  3. addresses #394 (comment)

    ahwagner committed Oct 3, 2022
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Commits on Oct 4, 2022

  1. Merge pull request #402 from ga4gh/fix-smoketests

    fix: get smoketests to pass
    korikuzma authored Oct 4, 2022
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Commits on Oct 7, 2022

  1. merge main

    ahwagner committed Oct 7, 2022
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  3. enable pre-releases

    ahwagner committed Oct 7, 2022
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  4. fix pip install command

    ahwagner committed Oct 7, 2022
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  5. merge gt & rcn docs

    ahwagner committed Oct 7, 2022
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  7. update vrs.yaml

    ahwagner committed Oct 7, 2022
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  8. Merge pull request #394 from ga4gh/swsu

    VRS Hackathon Genotype draft
    ahwagner authored Oct 7, 2022
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Commits on Oct 24, 2022

  1. fix: absolute + relative copy number models in models.yaml

    subject is now a CURIE
    korikuzma committed Oct 24, 2022
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Commits on Oct 26, 2022

  1. Merge pull request #407 from ga4gh/issue-405

    Update validation models
    korikuzma authored Oct 26, 2022
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Commits on Nov 2, 2022

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Commits on Nov 8, 2022

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  2. Merge pull request #409 from ga4gh/fix-models

    fix: models.yaml to take ordered property in account
    korikuzma authored Nov 8, 2022
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Commits on Nov 10, 2022

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Commits on Nov 14, 2022

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Commits on Jan 16, 2023

  1. Merge pull request #412 from ga4gh/issue-406

    Add tests to check schema validation in models.yaml (#406)
    korikuzma authored Jan 16, 2023
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  3. Merge pull request #413 from ga4gh/issue-408

    Add tests for ComposedSequenceExpression (#408)
    korikuzma authored Jan 16, 2023
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Commits on Mar 3, 2023

  1. draft CopyNumberAssessment

    ahwagner committed Mar 3, 2023
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  2. .gitignore

    ahwagner committed Mar 3, 2023
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  3. build schema

    ahwagner committed Mar 3, 2023
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  4. update validation tests

    ahwagner committed Mar 3, 2023
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  5. update type prefixes

    ahwagner committed Mar 3, 2023
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Commits on Mar 6, 2023

  1. update Sphinx to 4.x

    ahwagner committed Mar 6, 2023
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  2. CNV and CNA docs

    ahwagner committed Mar 6, 2023
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Commits on Mar 8, 2023

  1. back to 3.8

    ahwagner committed Mar 8, 2023
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  2. Update schema/vrs.json

    Co-authored-by: Kori Kuzma <korikuzma@gmail.com>
    ahwagner and korikuzma authored Mar 8, 2023
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  3. build JSON

    ahwagner committed Mar 8, 2023
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Commits on Mar 31, 2023

  1. addresses #404

    ahwagner committed Mar 31, 2023
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  2. baseline ploidy as state

    ahwagner committed Mar 31, 2023
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  3. CSE initial draft

    ahwagner committed Mar 31, 2023
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Commits on Apr 1, 2023

  1. Merge pull request #416 from ga4gh/issue-404

    closes #404
    ahwagner authored Apr 1, 2023
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  2. clarify example

    ahwagner committed Apr 1, 2023
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  3. Merge branch 'issue-363'

    ahwagner committed Apr 1, 2023
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  5. add 1.3 release notes

    ahwagner committed Apr 1, 2023
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  9. style bug fix attempt

    ahwagner committed Apr 1, 2023
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  11. fix markup error

    ahwagner committed Apr 1, 2023
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  12. remove extra tildes

    ahwagner committed Apr 1, 2023
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  14. add v1.2 ref

    ahwagner committed Apr 1, 2023
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  15. relative_copy_class -> copy_assessment

    IMO `relative_copy_class`  should be `copy_assessment` in the `CopyNumberChange` example?
    mbaudis authored Apr 1, 2023
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  16. update change_assertion

    ahwagner committed Apr 1, 2023
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  17. update example

    ahwagner committed Apr 1, 2023
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Commits on Apr 2, 2023

  1. Merge pull request #419 from mbaudis/patch-2

    relative_copy_class  -> copy_assessment in `CopyNumberChange` example
    ahwagner authored Apr 2, 2023
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Commits on Apr 13, 2023

  1. update efo codes to CURIEs

    ahwagner committed Apr 13, 2023
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