v0.1.0

0.1.0 (2026-10-04)

Features

• extractors: add scan_vcf_genotypes for per-sample carriers (e4aa23f)
• extractors: keep id, qual and filter in scan_vcf_variants (e5ba15e)
• extractors: match variant tables in the matchers (0cb5de5)
• extractors: match variants with a polars-bio overlap join (91c02a4)
• extractors: read VCF files as polars tables with polars-bio (841e6a3)
• kipoiseq2, kipoiseq without the Kipoi dataloaders and kipoi dependencies (36c521f)
• kipoiseq2, kipoiseq without the Kipoi dataloaders and kipoi dependencies (a012369)
• transforms: translate with the NCBI genetic code and annotated translation exceptions (bcf8bf6)

Bug Fixes

• allow intervals that end at the chromosome end (e9f5de1)
• extractors: accept a generator of Interval objects in the matchers (6d4c8ff)
• extractors: infer UTRs from the CDS with pandas 2 and later (a012369)
• extractors: keep the fixed length when the anchor is at the interval start (3ac59db)
• extractors: keep the interval in VariantIntervalQueryable.filter (7d113ab)
• extractors: keep the interval table public as intervals (cbc896d)
• extractors: mark the scan_vcf_variants output as 0-based (0865e03)
• transforms: build a new Interval in resize_interval (cf039b6)
• vcf: name the vcf extra when cyvcf2 is missing in to_vcf (775c4d6)
• vcf: use variant_gap when get_variants builds the regions (0afa1d4)

Performance Improvements

• extractors: join with the variants as the streaming side (dcce7f4)

Documentation

• drop protein from the package description (ec46061)
• move the migration guide from kipoiseq to MIGRATING.md (44df5b4)
• move the migration guide from kipoiseq to MIGRATING.md (468bdfc)
• say how to turn off the polars-bio progress bars (617855e)
• say main instead of master (45319cb)