Updating tools/checkm2 from version 1.0.2 to 1.1.0

[gxydevbot]

Hello! This is an automated update of the following tool: tools/checkm2. I created this PR because I think the tool's main dependency is out of date, i.e. there is a newer version available through conda.

I have updated tools/checkm2 from version 1.0.2 to 1.1.0.

Project home page: https://github.com/chklovski/CheckM2/releases

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[bgruening]

This release uses the NEW DIAMOND database version 3, available at DOI [10.5281/zenodo.14897628].

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[SantaMcCloud]

This release uses the NEW DIAMOND database version 3, available at DOI [10.5281/zenodo.14897628].

#6861

[SantaMcCloud]

Befor merge this we should merge this first #6864 to have a filter for the DB because the new DB (v1.1.0) can not be used with CheckM2 (v1.0.2).

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[SantaMcCloud]

@bgruening i did open a new PR to update CheckM2 and remove the DB filter since the the new DB can be used by this version and older can be used as well so there is no need for the filter.

This PR can be closed then. should i ping Matthias in this PR so this can be also merged?