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@nilchia nilchia commented Mar 27, 2025

This PR adds the function to create an anndata from a matrix and gene/barcode annotations.

ping: @nomadscientist @pavanvidem

FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

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nilchia commented Mar 27, 2025

+ planemo ci_find_repos --changed_in_commit_range HEAD~.. --exclude packages --exclude deprecated --exclude_from .tt_skip --output repository_list.txt
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/bin/planemo", line 5, in <module>
    from planemo.cli import planemo
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/planemo/cli.py", line 13, in <module>
    import click
ModuleNotFoundError: No module named 'click'

What is this error?

@SaimMomin12
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@nilchia I have restarted the CI run, lets see if that helps

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nilchia commented Mar 27, 2025

Thanks @SaimMomin12
I think it is working now.

@bgruening bgruening merged commit 08ce25c into galaxyproject:main Mar 29, 2025
19 checks passed
@nilchia nilchia deleted the anndata_import_custom branch June 21, 2025 21:05
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3 participants