tool_db

データベース

| データベース名 | 概要 | 関連論文 | 担当 | 調査結果 | |:------------|:---------|:--------|:--------| | NCBI |Bioinformatics Center |　|　| | | EMBL |Bioinformatics Center |　|　| | | PubMed |Biomedical literature |　|　| | | GenBank |Nucleic acid sequence| | | | | SRS at EMBL/EBI |Nucleic acid sequence| | | | | Entrez Genome |Genome sequence | | | | | TIGR database |Genome sequence | | | | | GenBank (protein) |Protein sequence | | | | | http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?db=Protein |Protein sequence | | | | | http://www-nbrf.georgetown.edu/ |Protein sequence |http://pir.georgetown.edu/pirwww/aboutpir/publication.html | | | | Protein Data Bank |Protein sequence | | | | | http://www.rcsb.org/pdb/ |Post-translational modifications |http://pir.georgetown.edu/pirwww/dbinfo/resid.html | | | | ENZYME |Biochemical and biophysical information | | | | | BIND |Biochemical and biophysical information | | | | | KEGG |Biochemical pathways |Introduction to KEGG | | | | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM |Disorders Database | | | | | http://www.ncbi.nlm.nih.gov/LocusLink/index.html |Gene information | | | | | http://www.pubgene.org/ |MedLineから自動抽出したヒトイデンッし発現量DB |http://www.nature.com/nglink/v28/n1/abs/ng0501_21.html | | | | http://bioinfo.mbb.yale.edu/partslist/ |アミノ酸立体構造予測 |http://nar.oupjournals.org/cgi/content/abstract/29/8/1750 | | | | http://www.ebi.ac.uk/interpro/ |プロテオーム関連DB |http://www.ebi.ac.uk/interpro/nar_interpro.pdf | | | | http://cdna.ims.u-tokyo.ac.jp/ |HumanのFull Length cDNA8000本 | | | | | http://www.atcc.org/ |STR(Short Tandem Repeat) and cDNA database | | | | | http://wdcm.nig.ac.jp/ |Microbial database | | | | | http://wdcm.nig.ac.jp/wdcm/JFCC.html |Culture collection | | | | | http://www.cbs.knaw.nl/nccb/ |mutant strains | | | | | http://srs.ebi.ac.uk/ |EMBLE database search | | | | | http://www.kazusa.or.jp/codon/ |Database of Codon usages | | | | | http://www.sanger.ac.uk/ |Portal site for bioinformatics | | | | | http://watson.nih.go.jp/new/latest.html |GenBank Updata information | | | | | http://snp.ims.u-tokyo.ac.jp/ |日本人SNPsDB| | | | | http://biochem.agr.nagoya-u.ac.jp/atgenome/index_noframe.php3 |シロイヌナズナゲノムデータベース | | | | | http://hgrep.ims.u-tokyo.ac.jp/ |ヒトゲノム再構築プロジェクト | | | | | http://www.ncbi.nlm.nih.gov/SNP |NCBIのSNPデータベース| | | |

リンク

データベース名	概要	関連論文
DatabaseList	ゲノム解析班のデータベースリスト
NAR Database	NARデータベース特集