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@gbouras13 gbouras13 released this 08 Jan 05:19
· 91 commits to main since this release
v1.2.0
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Learn about vigilant mode.
  • Improved ProstT5 3Di prediction throughput for phold run, phold predict and phold proteins-predict due to smarter batching implmentations
  • Addition of phold autotune subcommand to detect an appropriate --batch_size for your hardware
  • You can also use --autotune with phold run, phold predict and phold proteins-predict to automatically detect and use the optimal --batch_size (only recommended for large datasets with thousands of proteins)
  • Manuscript now published:

Bouras G., Grigson S.R., Mirdita M., Heinzinger M., Papudeshi B.,
Mallawaarachchi V., Green R., Kim S.R., Mihalia V., Psaltis A.J.,
Wormald P-J., Vreugde S., Steinegger M., Edwards R.A.

Protein Structure Informed Bacteriophage Genome Annotation with Phold
Nucleic Acids Research, Volume 54, Issue 1, 13 January 2026
https://doi.org/10.1093/nar/gkaf1448

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