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tulpaObs 0.0.231

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@gcol33 gcol33 released this 15 Aug 14:48
· 6 commits to main since this release
  • The sbc() registry's end-to-end composition test slices the pooled
    response at whatever rank the family brings.
    Its slice_site() helper
    enumerated ranks -- 3D array, else 2D matrix -- so ms_dyn_occu(), whose
    y is 4D [site x visit x season x species], fell to the 2D branch and
    errored with "incorrect number of dimensions". .tobs_sbc_pool_4d_species()
    was right: every registered family pools on the first axis and leaves the
    rest alone, so the helper now indexes axis 1 at any rank and the
    rank-enumeration cannot go stale again the next time a family arrives with
    a new response shape.

  • man/dot-tobs_community_em.Rd regenerated, clearing an R CMD check
    codoc WARNING. .tobs_community_em() gained re_aghq/n_quad/
    re_aghq_maxdim (with their roxygen) when the AGHQ variance debias was
    generalized onto it, but document() was not re-run, so the Rd's \usage
    had been three arguments behind the function since then.


Tagged before CI ran green. The run on this commit cleared the codoc WARNING
and the rank error, and reported one remaining failure: ms_abun() was
registered without its .sbc_reg_means() branch, so the sbc() registry
test read its community mean where the registry ranks the per-species
realized coefficient. That is fixed in v0.0.232, the first version in this
sequence with smoke (4936 assertions, 0 failures, 0 errors) and
R CMD check (Status: OK) both passing.