tulpaObs 0.0.231
-
The
sbc()registry's end-to-end composition test slices the pooled
response at whatever rank the family brings. Itsslice_site()helper
enumerated ranks -- 3D array, else 2D matrix -- soms_dyn_occu(), whose
yis 4D[site x visit x season x species], fell to the 2D branch and
errored with "incorrect number of dimensions"..tobs_sbc_pool_4d_species()
was right: every registered family pools on the first axis and leaves the
rest alone, so the helper now indexes axis 1 at any rank and the
rank-enumeration cannot go stale again the next time a family arrives with
a new response shape. -
man/dot-tobs_community_em.Rdregenerated, clearing anR CMD check
codoc WARNING..tobs_community_em()gainedre_aghq/n_quad/
re_aghq_maxdim(with their roxygen) when the AGHQ variance debias was
generalized onto it, butdocument()was not re-run, so the Rd's\usage
had been three arguments behind the function since then.
Tagged before CI ran green. The run on this commit cleared the codoc WARNING
and the rank error, and reported one remaining failure: ms_abun() was
registered without its .sbc_reg_means() branch, so the sbc() registry
test read its community mean where the registry ranks the per-species
realized coefficient. That is fixed in v0.0.232, the first version in this
sequence with smoke (4936 assertions, 0 failures, 0 errors) and
R CMD check (Status: OK) both passing.