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It is possible to silently install msysgit using the following flags when called from a dos prompt:
/SILENT /COMPONENTS="icons,ext\reg\shellhere,assoc,assoc_sh"
An example of this is
Git-1.9.4-preview20140611.exe /SILENT /COMPONENTS="icons,ext\reg\shellhere,assoc,assoc_sh"
You can find all of the possible flags to use by inspecting the install.iss file:
https://github.com/msysgit/msysgit/blob/master/share/WinGit/install.iss