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glydet 0.11.0

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@fubin1999 fubin1999 released this 04 May 03:37

New features

  • traits_basic() and traits_detailed() now support an optional sia_link parameter. When set to TRUE, additional sialic acid linkage traits are included: GE, GL, TE, TL (in traits_basic()), and A1EA4E, A1LA4L, A1GEA4GE, A1GLA4GL (in traits_detailed()). These traits require nE and nL columns in var_info (#15).
  • Add traits_clerc_2018(), traits_li_2025(), and traits_fu_2026() as new sets of built-in traits (#16).
  • Add traits_basic() and traits_detailed() as the preferred names for built-in trait sets. basic_traits() and all_traits() remain available as compatibility aliases (#17).

Minor improvements and bug fixes

  • make_trait() and AI-enabled explain_trait() now support configurable ellmer providers, including OpenAI, Anthropic, Gemini, OpenRouter, and OpenAI-compatible endpoints, with glydet.ai_* package options for session defaults (#14).
  • derive_traits() can now use columns in var_info as meta-properties without specifying mp_cols. Built-in meta-properties keep precedence by default; use mp_cols when columns need renaming or explicit overrides (#12).
  • Rewrite the "Get Started with glydet" vignette to first introduce the core functionality of glydet on a glycomics dataset, then apply it to a glycoproteomics dataset, to provide a more gradual learning curve for new users (#8).
  • Fix lifecycle badge rendering in the reference site.