glysmith 0.10.0

Breaking Changes

• Split step_quantify_motifs() into two separate functions:
  • step_quantify_dynamic_motifs(): For quantifying all possible motifs using glymotif::dynamic_motifs(). Works with any glycan type.
  • step_quantify_branch_motifs(): For quantifying N-glycan branch motifs using glymotif::branch_motifs(). Only works with N-glycans.
• Removed step_quantify_motifs() function entirely.
• Updated all downstream steps to accept the new data types (dynamic_motif_exp, sig_dynamic_motif_exp, branch_motif_exp, sig_branch_motif_exp) instead of the old motif_exp/sig_motif_exp.
• Differentiated DEA results: dynamic_motif_exp now generates dynamic_dma_res and branch_motif_exp generates branch_dma_res.

Minor improvements and bug fixes

• Add a vignette about creating a blueprint manually.