glysmith 0.11.0

New features

• Add step_infer_structure() for inferring glycan structures from composition using glyanno (#13).
• Add step_sig_enrich_ncg(), step_sig_enrich_wp(), and step_sig_enrich_do() functions for Network of Cancer Gene, WikiPathways, and Disease Ontology enrichment analysis, respectively (#14).
• AI features now support more model providers including OpenAI, Anthropic, Gemini, OpenRouter, and OpenAI-compatible models. The default model is still deepseek-chat (#15).
• polish_report() with use_ai = TRUE now includes a summary of the analysis results at the end of the report, generated by the LLM using multimodal reasoning (#16).

Minor improvements and bug fixes

• check_glysmith_deps() now checks only the packages required by the supplied blueprint, instead of asking users to install every optional dependency. Step-specific glycoverse packages are optional again, with installation guidance for the glycoverse r-universe repository (#17).
• Enrichment analysis now uses glyfun instead of glystats, as enrichment analysis functions in glystats have been deprecated in favor of glyfun (#10).
• quench_result() no longer leaves a stray Rplots.pdf in the working directory (#18).