glystats 0.11.0

Breaking changes

• All gly_*_() matrix and vector interfaces are removed. Use the corresponding gly_*() function with a glyexp::experiment() or SummarizedExperiment object instead. (#12)
• gly_enrich_go(), gly_enrich_kegg(), gly_enrich_reactome(), gly_enrich_wikipathways(), gly_enrich_do(), gly_enrich_ncg(), and gly_enrich_dgn() are removed. These functions were deprecated in 0.10.0. Use the corresponding functions in the glyfun package instead. (#13)

New features

• All gly_*() analysis functions and filter_sig_vars() now accept SummarizedExperiment objects in addition to glyexp::experiment() objects. (#14)