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GDM Science Skills v1.0.5

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@artsobolev artsobolev released this 01 Jul 20:11

Added

  • Credentials Skill: Introduced a new credentials skill that defines a standard "Safe Credentials Protocol" for verifying and prompting for API keys/credentials safely.
  • Citations: Added references/citation.bib files to almost all skills, providing academic citations for the databases and tools used.

Changed

  • License Notification Standardization: Standardized license notification storage. Notification files are now stored in a centralized .licenses/ directory in the workspace root (e.g., .licenses/<skill_name>_LICENSE.txt) instead of local LICENSE_NOTIFICATION.txt files inside each skill directory.
  • Credential Handling Refactoring: Updated skills requiring credentials (such as alphagenome_single_variant_analysis) to use the new credentials skill protocol, removing duplicated credential-handling instructions from individual skills.
  • Dependency Migration: Migrated HTTP-related scripts to use the polite-http package instead of the local scienceskillscommon package.

Removed

  • scienceskillscommon Skill: Removed the local scienceskillscommon skill as its HTTP client functionality has been replaced by the polite-http package.

Full Changelog: v1.0.4...v1.0.5