2026.8.0

New haddock3 release

This haddock3-user-manual release corresponds to the haddock3 2026.8.0 release.

New

• Information about a new HADDOCK3-interface-analysis marimo notebook
• Section explaining new caprifilter module
• Section explaining new rnascan module
• Section explaining upcoming dnascan module
• Page listing all particles supported by hadddock3
• Explanation about GRID fallback
• New example workflow related to CG refinement
• Information about usage container docs

Fixes

• Deployment action
• Broken links

Full Changelog: 2026.5.0...2026.8.0

2026.5.0

New haddock3 release

This haddock3-user-manual release corresponds to the haddock3 2026.5.0 release.

New

• Added explanation about automated small molecule parameter definition.
• Added explanation about the GC modules to the user manual.
• Updated topology.md for ACE-CYS cyclisation.

Updates/upgrades

• Removed gdock mentions.
• Enhanced documentation for small molecule docking.
• Upgraded on il- and rmsdmatrix and definitions of flexibility.
• Updated sampling.md.
• Updated topology.md.

New Contributors

• @rversin made their first contribution in #32

Full Changelog: 2025.11.0...2026.5.0

2025.11.0

What's Changed

• remove link to src/airs.md that does not exist by @AnnaKravchenko in #19
• Update tutorials.md by @amjjbonvin in #17
• add more accept arguments to lychee by @rvhonorato in #21
• fix broken link by @rvhonorato in #22
• add CONTRIBUTING.md by @rvhonorato in #23
• add grid mode info by @rvhonorato in #20

New Contributors

• @AnnaKravchenko made their first contribution in #19

Full Changelog: 2025.8.0...2025.11.0

Haddock3 v2025.8.0

Haddock3 Hot summer stable release - v2025.8.0

What's Changed

• Fix Docker install instructions by @sjdv1982 in #14
• Update docker-install.md by @amjjbonvin in #16
• Haddock3 v2025.08.0 - August release by @VGPReys in #13

New Contributors

• @sjdv1982 made their first contribution in #14
• @amjjbonvin made their first contribution in #16

Full Changelog: 2025.05.0...2025.8.0

2025.05.0

Release of the haddock3 user manual related to haddock3 release/tag 2025.05.0.

This represent the actual first stable release, described in the BioRxiv paper.

Marco Giulini, Victor Reys, Joao M. C. Teixeira, Brian Jimenez-Garcia, Rodrigo V. Honorato, Anna Kravchenko, Xiaotong Xu, Raphaelle Versini, Anna Engel, Stefan Verhoeven, Alexandre M.J.J. Bonvin, HADDOCK3: A modular and versatile platform for integrative modelling of biomolecular complexes 2025 BioRxiv