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v0.6.0

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@danvk danvk released this 13 Nov 19:16
· 195 commits to master since this release
  • Visualizations can now accept options, for example:
    • viewAsPairs and colorByInsert are options for pileup.viz.pileup
    • vafThreshold is an option to pileup.viz.coverage
  • The new Location Omnibox combines start & stop values.
  • You can enter full ranges like “chr17:1,234-2,345” into the omnibox directly (useful for copy/paste).
  • Coverage Track now shows all bases (including the reference) for high VAF mismatches
  • Added support for track option menus. The pileup track now exposes “View as Pairs” and “Color by Insert” in the UI.
  • You can re-sort the pileup around the center base using the options menu. Sorting happens automatically on the initial load and after jumps.
  • Eliminated Moiré patterns and improved crispness for all tracks.
  • Fixed a bug where coverage values were inaccurate.
  • pileup now uses off-screen buffers for faster rendering. After the initial drawing, panning should be extremely smooth.
  • Performance optimizations to the 2bit data source (i.e. the reference)
  • Internal: Updated all React components to be ES6 classes and added types for their props and state.
  • Internal: Using travis-weigh-in to track code size
  • Internal: Added screenshot tests (via seltest)