454 seq data for SCID trials (SCID1 and SCID2) was retrieved for the old integration 
site database (MySQL intsites) and formatted for the current patient report maker with 
via SCID_454seq_data_prep.R. The resulting rds file (SCID1_Paris_London_and_SCID2_Paris_Boston.rds) 
was injected into the report maker using the --legacyData flag.

The outputs of the report maker were collated into a single data frame (SCID_data.rds)
using this script:  
  microb120:/media/lorax/data/export/projects/build_SCID_data.R

analysis.R attempts to recreate the figures from the 2014 NEJM paper using the 
38 oncogenes used for the paper (onocGeneList.txt).