OpAssign: Taxonomic assigner on 16S-ITS-23S operons using RDP Classifier.

Taxonomic assignment on long read sequences (ONT/PacBio) using RDP Classifier trained from GROND database.

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✨ Features

✅ Assign taxonomy

✅ Uses RDP Classifier to classify.

✅ Supports multiple CPUs

⚡ Installation

Clone the Repository & Set Up the Environment

# Clone the repo
git clone https://github.com/hsgweon/opassign.git

# Create the seqdemu environment (ensure that you have conda installed)
mamba create -n opassign_env -y -c conda-forge -c bioconda conda-forge::biopython conda-forge::psutil progressbar2 

🎬 Running seqdemu

mamba activate opassign_env
opassign.py -i rep_16S23S_nr.fasta -o assigned_tanoxony.txt -t 100