hydra-genetics v0.7.0

Features

• add '-' to barcode wildcard constraint (2c5867b)
• add minimap2 (c911f3d)
• add minimap2_index rule (abffb12)
• add option to use subsampled fastq files by specifying seqtk in config (52e72e3)
• add pbmm2 rules (1781b8b)
• change unsorted bam file name to work with newer snakemake wrapper (09eb041)
• remove need to sort with samtools when input to merge rules are already sorted (ac38b9d)
• set SM tag using wildcards for sample and type (28295b5)
• write pbmm2 and minimap2 index files to a their own directies (5baef7d)

Bug Fixes

• minimap2: change how the mmi file input path is generated (38834b2)
• pbmm2: change how the mmi file path is generated (ff99bad)
• pbmm2: set SM tag to {sample}_{type} (e8411ee)
• point to correct config entry in minimap2 merge rule (6c8b286)

Documentation

• add long read images for docs (4840a6a)
• add longread dag image (7197de3)
• add minimap to softwares.md (a4464db)
• fix description line (caa33d1)
• fix the output name (b986637)
• rename image (697d4fa)
• Update docs/images/alignment.longread.dot (467f45a)
• update schemas (6857d33)
• update software description (becda7a)
• update the rules schema (aa34eff)
• update the rules schema (91b1351)
• update the rules schema (7f8cdf9)
• updated dag grapghs (173e1c5)
• updated intro text with longread (f63e28a)